Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGgtattattttaccgttgtgatattttattaatgatattactgtacaaagagaaagggggggggggggggggtgattagaatgcagtttgatgtagctgagttatgcttttggcag

Basic information

species Glycine max
transcript GLYMA07G03890.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 11
TTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGgtattattttaccgttgtgatattttattaatgatattactgtacaaagagaaagggggggggggggggggtgattagaatgcagtttgatgtagctgagttatgcttttggcag--
|  || || | |||||||| ||||||||||| |||||||| |||||||| || |||||| | || |||||||| || ||||||||  | ||  | ||||||||||    |          |||  ||||  | ||| |||  | |  |   | |                     ||   |  | |||   ||      |||||  | |    |   
TAACATCTATGGCTAAAGAACAAGGGAAGAACAATGTTGCTTTCCTTTGTTTCTTCATGCTAGGAAAACTTGAAGAATGCCTTCAGTTGTTAATCGAAAGgtattgccatttgccaagactatcctatt--taatagtacaatgcttattcagaaaata----------------tattttttattttatggtgatcacgttatattctctatacag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 20
TTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGgtattattttaccgttgtgatattttattaatgatattactgtacaaagagaaagggggggggggggggggtgattagaatgcagtttgatgtagctgagttatgcttttggcag--
|  || || | |||||||| ||||||||||| |||||||| |||||||| || |||||| | || ||||| || || || |||||| | ||  | ||||||||||    |          |||  ||||  | ||| |||  | |  |   | |    |                ||   |  | |||   ||      |||||  | |    |   
TAACATCTATGGCTAAAGAACAAGGGAAGAACAATGTTGCTTTCCTTTGTTTCTTCATGCTTGGAAAACTGGAAGAATGTCTTCAATTGTTAATCGAAAGgtattgccatttgccaagactatcctatt--taatagtacaatgcttattcagaaaatg----------------tattttttattttatggtgatcacgttatattctctatacag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 9
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 24
TTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGgtattat-tttaccgttgtgatattttattaatgatattactgtacaaagagaaagggggggggggggggggtgattagaatgcagtttgatgtagctgagttatgcttttggcag
| ||| | ||||| ||||||||||| ||||| ||||| || || |||||||| |||||||||||| || | || |||||||| || || ||||| ||||||||   | |||||  ||    | ||  ||     | ||   |   |  |   ||    |     |  |    | ||  |  | |||                              
TGGCAGCACTTGCAAAAGAGCAAGGAAAGAACAATGTCGCTTTTCTTTGCTTGTTCATGTTGGGTCAAGTAGAAGACTGCCTGCATCTGTTGGTGGAAAGgtacattgtttactatt----tcttacatgtggaacatatattcccgcaactaattacgtctatgctgatattaatatggttacag------------------------------

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 9
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 20
TTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGgtattatttta----ccgttgtgatattttattaatgatattactgtacaaagagaaagggggggggggggggggtgattagaatgcagtttgatgtagctgagttatgcttttggcag
||||||| ||||||||||| ||||||||||| ||||| || || |||||| |||||||| |||||||||| || || ||  | ||  | ||||| || ||||| |   |||     |  |      |||    ||| | |||  || ||     |  |   | | |         |      |                                    
TTGCAACACTTGCTAAAGAACAAGGGAAGAACAATGTCGCCTTTCTTTGCCTATTCATGCTGGGTAAACTGGAAGATTGTTTGCAGTTATTGGTGGAGAGgtaattcattagtagtcacttgagagtttggaaaatcaaatttatgcacctttggttaactgtgtgacaatattttttcctcag-----------------------------------

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 20
TTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGgtattattttaccgttgtgatattttattaatgatattactgtacaaagagaaagggggggggggggggggtgattagaatgcagtttgatgtagctgagttatgcttttggcag
||||| | ||||||||||| || |||||||| || ||||| |||||||| || ||||||||||||||| | || || || || || || ||||| || |||||                       |||  || | |||||| | | |  | ||    |   |  | || |  |||  | |   |   ||||   ||||   || || || ||||
TTGCATCCCTTGCTAAAGAACAGGGGAAGAACAACGTTGCCTTCCTTTGTTTGTTCATGTTGGGTAAATTGGAAGAGTGTCTGCAGCTGTTGGTGGACAGgta-----------------------attgttgttgttactgcaaacatgggaacaaagatagttgtggagatattccacttttgg--gatgatactgaagcattctctttgcag

upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 20
TTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGgta-----ttattttaccgt-----tgt-gatattttattaatgatattactgtacaaagag----------------aaagggggggggggggggggtgattagaatgcagtttgatgtagctgagttatgcttttggcag--------------------
|||   | || |||||| |||| |||||||||||||| ||||||||||| ||||||| | |||||||| | || || |||||||| || ||||| || |||||     ||   ||||| |       | || | |  | |  ||||| || | ||  |                    ||  |       || ||  ||   ||  |  |||   | ||    |||||| | ||  |   |                     
TTGTTTCACTGGCTAAAAAGCAGGGGAAGAATAATGTCGCATTCCTTTGTTTATTCACGCTGGGTAAATTGGAAGAGTGCCTTCAGCTGTTGGTGGAGAGgtaatcattttccttaccatataaccatagaaaatcaactgctgatactaatttattacacatttacttatttcatttaacagacaatatggtggtagtttatatgacccaggaagttgagattgagtt-tactgattagactctgatatggtctgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208332645|gb|GE129050.1|GE129050
EST:     TTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAG                         CAATCGGATTCCAGAGGCT
genomic: TTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGgtattatttt ... cttttggcagCAATCGGATTCCAGAGGCT
EST: gi|298182438|gb|HO026613.1|HO026613
EST:     TTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAG                         CAATCGGATTCCAGAGGCTGCTTTAATGGCTCGATCCTATCTCCCAAGCAA
genomic: TTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGgtattatttt ... cttttggcagCAATCGGATTCCAGAGGCTGCTTTAATGGCTCGATCCTATCTCCCAAGCAA