1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
AAGAAAACCGAAATGCAGAGTCTGATAACAAGAAGAAACAAAACAAGGAAGTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaagttatcatttacattgatttattaatgtaaaagtagtgtctgttgctactttgatgtgtctattgtcctttttaaataatttttctataa...
species | Glycine max |
transcript | GLYMA06G36130.3 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAG ATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGAEST: gi|7234399|gb|AW569737.1|AW569737
genomic: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaa ... tgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
EST: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAG ATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGAEST: gi|7591193|gb|AW706931.1|AW706931
genomic: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaa ... tgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
EST: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAG ATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
genomic: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaa ... tgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAAACCGAAATGCAGAGTCTGATAACAAGAAGAAACAAAACAAGGAAGTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaagttatcatttacattgatttattaatgtaaaagtagtgtctgttgctactttgatgtgtctattgtcctttttaaataatttttctataa
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