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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATGAATGTTgtgagttatctattgaatttcagctgattgccatatttgatccttcaatttatttatttgtcaggctgatggacctttccatttatcagggtggaatatagtaatatggattatatttttctggttttaactggggatcttgttatttgtcactag

Basic information

species Glycine max
transcript GLYMA06G09360.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 5'ss of exon 18
TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATGAATGTTgtgagttatctattgaatttcagctgattgccatatttgatccttcaatttatttatttgtcaggctgatggacctttccatttatcagggtggaatatagtaatatggattatatttttctggttttaactggggatcttgttatttgtcactag
|||||  || || |||||||| ||||||||||||||| |||| || ||||| ||||| ||| | ||||| ||||||||| ||||||| ||  | ||||||||||||     | | |  ||   ||| |    ||||||     ||  |    || ||||   | |||   ||    |||||   |  | || | |||    |||| ||| |                                             
TCCTGCTGGGATAAATGCTCTATTTAGTCATGGACCACGGCGGTCAGCAGGTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagt-----actcatctttgactg-tacttatattttgatatt--accagttcatttcaaatgctttagg----ttcca---aaaaaggggaaattatataatttggttggct-----------------------------------------

upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os01g09246.1 (Oryza sativa), 5'ss of exon 20
TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATGAATGTTgtgagttatcta--ttgaatttcagctgattgccatat-ttgatccttcaatttatttatttgtcaggctgatggacctttccatttatcagggtggaatatagtaatatggattatatttttctggttttaactggggatcttgttatttgtcactag---------------------
|||||  ||||| |||||||| ||||||||||||||| |||| || ||||||||||| ||| | |||||  | |||||  |||| ||  |  | |||||||| |||   |||  |  |  | ||  | ||||    ||  | ||   || || |  |  ||||  |  || |  |||   |  | |||   | ||     ||  |    ||| ||    ||| |  | |||   |     | ||| | | | |   ||                      
TCCTGCTGGAATAAATGCTCTTTTTAGTCATGGACCACGGCGATCAGCAGGCCTTGCTCGTGTGTATGCATTATGGAACATTACTTCACTGGTCAATGTTgtaagtatgctatgtccatctgcatttcattgttgcatgcttatttgtctatattgtattttgagatcctaa--gacggctgtagtta---gtgtctgccattattcactggttttagctttccccgattttgttcttattgttgatttatcttcataatcctcttcccatgatattcag

upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G412234_T01 (Zea mays), 5'ss of exon 10
TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATGAATGTTgtgag--ttatctattgaatttcagctgattgccatatttg-atccttcaatttatttatttgtcaggctgatggacctttccatttatcagggtggaatatagtaatatggattatatttttctggttttaactggggatcttgttatttgtcactag
||||| ||| || |||||||| |||||||||||||| ||||| || ||||||||||| ||| | |||||  |||||||  | || ||  |  | |||||||| ||  || |  |   |  | ||  | | ||  ||||  | |||  |||       |   || ||     |||    |||   ||       |||   |       |||    |   | |   || |  || || |                      
TCCTGCCGGTATAAATGCTCTATTTAGTCATGGACCGAGGCGGTCAGCAGGCCTTGCTCGTGTGTATGCATTGTGGAACATAACTTCACTGGTCAATGTTgtaagtattcttcacccacctacatttcaatgttatatcggtatctatcacacgtaatggctg-caattgaatgagttttttttttctatcaagtgt--tgcgcctctataaccttcctgtgcttgttaatatctag----------------------

upper sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM5G820781_T01 (Zea mays), 5'ss of exon 5
TCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATGAATGTTgtgagttatctattgaatttcagctgattgccatatttgatccttcaatttatttatttgtcaggctgatggacctttccatttatcagggtggaatatagtaatatggattatatttttctggttttaactggggatcttgttatttgtcactag
|||||  || || |||||||| |||||||||||||| ||||| || ||||||||||| ||| | |||||  |||||||  | || ||  |  | ||||| || |||  ||| |  |    |  |  ||| | || ||  |||      |  |  | | |  |   ||    |  |||   | |    ||                                                                   
TCCTGCTGGTATAAATGCTCTATTTAGTCATGGACCGAGGCGATCAGCAGGCCTTGCTCGTGTATATGCATTGTGGAACATAACTTCACTGGTCAATGTCgtaagtattct-tcaaccacctac--attccaatgttatatcaagtgttacacctctataactttctccctgtgcttgttaatccctag-------------------------------------------------------------------