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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTTCCTGCATGGCTAAACTGTTTGCCAATAAAAGGTGATTTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggccatactctgcttttctcaatcttctgatatgctcaagctgtcatgcatatctttttcctctgtactaattgtctgttaatctgcag

Basic information

species Glycine max
transcript GLYMA05G28950.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28950.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G011246_T01 (Zea mays), 5'ss of exon 2
GTAGTTCCTGCATGGCTAAACTGTTTGCCAATAAAAGGTGATTTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggccatactctgcttttctcaatcttctgatatgctcaa-gctgtcat-gcatatctttttcctctgtactaattgtctgttaatctgcag
|| ||||| || ||||| ||||| ||||||||||||| |||   |||||| || |||| ||| ||||| |||||||| |||||||  |||||||   |   |||     |        | ||| | || | |   || | | |    |  |||| || |||| | | ||    |               
GTTGTTCCAGCCTGGCTTAACTGCTTGCCAATAAAAGATGACAAGATTGAAGCTAAAGCTGTACATGAACAACTTTGCTCAATGGTGGAGAGgt--agtctcatgactgga-------agtctgccgacaaggataatgtttttgcagtttatcattatcctttctgcttggag---------------

upper sequence: GLYMA05G28950.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 18
GTAGTTCCTGCATGGCTAAACTGTTTGCCAATAAAAGGTGATTTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggccata-----ctctgcttttct----caatcttctgatatgctcaagctgtcatg-catatctttttcct-ctgtactaa-------------ttgtctgttaatctgcag
|| |||||||| ||| | |  || ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||| ||| | || |||    | |      | | ||||| |    | ||  ||  || || |     ||   ||  ||||||    | | |   | |||             || |   || |||| |||
GTTGTTCCTGCCTGGTTGAGTTGCTTGCCAATAAAGGGTGATTTGATCGAGGCCAAAGTTGTTCATGACCAACTTTGTTCAATGGTTGAAATgtaaggacttaaaaagttttttacttttatgcatccattctcctatctgtttcctatggtgtggtatatctaccccatacaagattaagctgaggcatgtctttttcatttatctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015090|gb|CX701832.1|CX701832
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|23733694|gb|BU765054.1|BU765054
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATATT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|213597745|gb|DB964482.1|DB964482
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|51343620|gb|CO984353.1|CO984353
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|298166149|gb|HO009120.1|HO009120
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|58016994|gb|CX703736.1|CX703736
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|9258815|gb|BE346962.1|BE346962
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|14008648|gb|BG725252.1|BG725252
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|254327539|gb|GR837148.1|GR837148
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|57575075|gb|CX548050.1|CX548050
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|51338442|gb|CO982308.1|CO982308
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT