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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggcaaaatatctgcaaatattcccactatattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtag

Basic information

species Glycine max
transcript GLYMA05G27900.2
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27900.2 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 5'ss of exon 20
----------------AGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaa--tatggactggccaaggcaaaatatctgcaaatattcccactatattttgtaccttcctctttctg----aaactaatctttgggttgagtcttgtag
                ||||||| || ||||| ||||||||  |  |||||||||||||||| ||||  |||||||||| ||| ||||| ||  |  | |||||  | |  |   |     || ||| | ||    |   |   ||  |  | |  |  || || |||        | |||||      |||  |   || ||
ATGAAGCGCAACACTGAGCATGATCCCCCATATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGATTCTTTCAGGACTACACCACTATGCACATGgtaaactctataacagatgctgctaaacaactattca-gcttttacccttctgtaaattttactgtttgcacgatgatctaataacattgttctgctctgaag

upper sequence: GLYMA05G27900.2 (Glycine max), 5'ss of exon 20
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
----------------AGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggca---aaatatctgcaaata---ttcccact-atattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtag---------------------------------------
                |||||||||| || ||||||||||| ||| ||||||| |||||||||||||| |||||||| |||||||||||||| ||| ||||||||||  |   |  ||  ||   ||| |    |||  |    ||  ||| | |||||  | |||     ||   | |      ||||  || |  ||| |                                         
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctcttactgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag

upper sequence: GLYMA05G27900.2 (Glycine max), 5'ss of exon 20
lower sequence: EFJ24054 (Selaginella moellendorffii), 5'ss of exon 21
----------------AGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggcaaaatatctgcaaatattcccactatattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtag
                |||||||| |||| |||||||||||||| || ||||| |||||||| ||     | |||||| | || ||| | |||||  |||||||   |          ||        ||||||   ||    | ||    |||   |   |||                                 
AACAGACGTAACACCGAGCATGACGCTCCTTACTGGAGAGGCCCTGTATGGATCAACATGAACTATCTCGTCCTTTCATCCCTTCACTACTACTCGCAAGgtaacgcgtgtgacttttgg--------ctgcaagcgtttattccatccactgtgtgtgtttctag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193545762|gb|FK500853.1|FK500853
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|207756209|gb|GD727108.1|GD727108
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCGAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|207689117|gb|GD673470.1|GD673470
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCA
EST: gi|58018465|gb|CX705207.1|CX705207
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|193671515|gb|FK612041.1|FK612041
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|7041994|gb|AW471888.1|AW471888
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|12690707|gb|BG157043.1|BG157043
EST:     TTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: TTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|193716731|gb|FK654289.1|FK654289
EST:     ATAAACATGAATTACAGAATTCTTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: ATAAACATGAATTACAGAATTC-TTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|193673103|gb|FK618965.1|FK618965
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|209703470|gb|BW678247.1|BW678247
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA