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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggcaaaatatctgcaaatattcccactatattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtag

Basic information

species Glycine max
transcript GLYMA05G27900.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27900.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 5'ss of exon 20
ATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaa--tatggactggccaaggcaaaatatctgcaaatattcccactatattttgtaccttcctctttctg----aaactaatctttgggttgagtcttgtag
||||| | |||||| |||||||| || ||||| ||||||||  |  |||||||||||||||| ||||  |||||||||| ||| ||||| ||  |  | |||||  | |  |   |     || ||| | ||    |   |   ||  |  | |  |  || || |||        | |||||      |||  |   || ||
ATGAAGCGCAACACTGAGCATGATCCCCCATATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGATTCTTTCAGGACTACACCACTATGCACATGgtaaactctataacagatgctgctaaacaactattca-gcttttacccttctgtaaattttactgtttgcacgatgatctaataacattgttctgctctgaag

upper sequence: GLYMA05G27900.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
ATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggca---aaatatctgcaaata---ttcccact-atattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtag---------------------------------------
|||||||  ||||||||||||||||| || ||||||||||| ||| ||||||| |||||||||||||| |||||||| |||||||||||||| ||| ||||||||||  |   |  ||  ||   ||| |    |||  |    ||  ||| | |||||  | |||     ||   | |      ||||  || |  ||| |                                         
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctcttactgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag

upper sequence: GLYMA05G27900.1 (Glycine max), 5'ss of exon 20
lower sequence: EFJ24054 (Selaginella moellendorffii), 5'ss of exon 21
ATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggcaaaatatctgcaaatattcccactatattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtag
|  | ||  ||||| ||||||||| |||| |||||||||||||| || ||||| |||||||| ||     | |||||| | || ||| | |||||  |||||||   |          |||        |||||   ||    | ||    |||   |   |||                                 
AACAGACGTAACACCGAGCATGACGCTCCTTACTGGAGAGGCCCTGTATGGATCAACATGAACTATCTCGTCCTTTCATCCCTTCACTACTACTCGCAAGgtaacgcgtgtgacttttggc--------tgcaagcgtttattccatccactgtgtgtgtttctag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193545762|gb|FK500853.1|FK500853
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|7041994|gb|AW471888.1|AW471888
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|193673103|gb|FK618965.1|FK618965
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|193671515|gb|FK612041.1|FK612041
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|207689117|gb|GD673470.1|GD673470
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCA
EST: gi|51334717|gb|CO978583.1|CO978583
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|254323179|gb|GR835787.1|GR835787
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|13788695|gb|BG651286.1|BG651286
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|12690707|gb|BG157043.1|BG157043
EST:     TTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: TTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|193460590|gb|FK428031.1|FK428031
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|193716731|gb|FK654289.1|FK654289
EST:     ATAAACATGAATTACAGAATTCTTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: ATAAACATGAATTACAGAATTC-TTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|5126438|gb|AI748174.1|AI748174
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: gi|209703470|gb|BW678247.1|BW678247
EST:     GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA