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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAATTCAACTCTGAGCTTGAGGGTCCATATTGGAGAGGTCAAATTTGGATAAACATGAATTACAGAATTCTTTCAGCGCTCCACCATTACTCCAAAGgtaatatgaactggcctaggcaaaatatctgcaaatatttcacttcattcataccttgtggtgaatgttgtag

Basic information

species Glycine max
transcript GLYMA05G27890.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27890.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 5'ss of exon 20
ATGAAATTCAACTCTGAGCTTGAGGGTCCATATTGGAGAGGTCAAATTTGGATAAACATGAATTACAGAATTCTTTCAGCGCTCCACCATTACTCCAAAGgtaa--tatgaactggcctaggcaaaatatctg--caaatatttcacttc----attcataccttgtggtgaatgttgtag---------------------
|||||   |||| |||||| |||    |||||||||||||||   ||||||||||||||||| ||||  ||||||||||  || ||||| ||  |  | |||||  | |  |   |     || ||| | ||   ||  | || | ||||    | |  |||  | ||    ||| | ||                      
ATGAAGCGCAACACTGAGCATGATCCCCCATATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGATTCTTTCAGGACTACACCACTATGCACATGgtaaactctataacagatgctgctaaacaactattcagcttttacccttctgtaaattttactgtttgcacgatgatctaataacattgttctgctctgaag

upper sequence: GLYMA05G27890.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
ATGAAATTCAACTCTGAGCTTGAGGGTCCATATTGGAGAGGTCAAATTTGGATAAACATGAATTACAGAATTCTTTCAGCGCTCCACCATTACTCCAAAGgtaatatgaactggcctaggca---aaatatctgcaaatatttcacttcattcataccttgtgg--tgaatgttgtag------------------------------------------------------------------
||||||   ||| | |||| |||    || || |||||||||| ||||||||| |||||||||||||| |||||||| || ||||||||||| ||| ||||||||||  |   |   |  ||   ||| |    |||  |  || ||| | | | |  ||   |  ||||  ||  |                                                                   
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctctt-actgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag