Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGCTGCATTTGCTGGTGCTGTTTTGGGTGACAATGCTCTGATGGAGAAAGCATGGCAGGATACTGGAATGCTGGCAGAGGCTGTGCTTCATGCTCATgtatgatttgttacgtacagctagttgatccctcaatttagtacttgtaatctgaccttgttattttccag
Basic information
species | Glycine max |
transcript | GLYMA03G38530.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G38530.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G310944_T01 (Zea mays), 5'ss of exon 7
GGAAGCTGCATTTGCTGGTGCTGTTTTGGGTGACAATGCTCTGATGGAGAAAGCATGGCAGGATACTGGAATGCTGGCAGAGGCTGTGCTTCATGCTCATgtatgatttgttacgtacagcta-gttgatccctcaatttagtacttgtaatctgaccttgttattttccag-----------------------------
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CGAAGCAGCCTTTGCTGCTGCAGTTTTGGGAGATAATGCTCTAATGGAGAAAGCATGGCAGGACACAGGAATGTTGGCTGAGGCTGTTTTACATGCTCAAgtaagttcttttgaattttctcatgctcaatcct-acttcatgagctgcaaaccattatggttttgcgtaataacactttttttggtcttcccatttcctt
upper sequence: GLYMA03G38530.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM5G831142_T01 (Zea mays), 5'ss of exon 1
GGAAGCTGCATTTGCTGGTGCTGTTTTGGGTGACAATGCTCTGATGGAGAAAGCATGGCAGGATACTGGAATGCTGGCAGAGGCTGTGCTTCATGCTCATgta--tgatttgttacgtacagctagttgatccctcaatttagtacttgta----atctgaccttgttattttccag-----------------------
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CGAAGCAGCATTTGCTGCCGCAGTTCTGGGAGATAATGCCCTAATGGAGAAAGCATGGCAGGACACAGGAATGTTAGCTGAGGCTGTTTTACATGCTCAGgtaggttatttgtttaattgaattctctcatgctcaatcctactttatgagctgcataccattatggttttgtccaataacacatttccgtgtcttcaaa
upper sequence: GLYMA03G38530.1 (Glycine max), 5'ss of exon 20
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 20
GGAAGCTGCATTTGCTGGTGCTGTTTTGGGTGACAATGCTCTGATGGAGAAAGCATGGCAGGATACTGGAATGCTGGCAGAGGCTGTGCTTCATGCTCATgtatgatttgttacgtacagctagttgatccctcaatttagtacttgtaatctgaccttgttattttccag----------------------------
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AGAATCAGCATTTTCTGCTGCAGTTCTGGGAGACAATGCGCTCATGGAGAAGGCATGGCAAGACACGGGAATGCTCGCAGAAGCCGTGCTTCATGCCCATgtaagattgtttttgtatt-----ttggtttttctttttgcagtttataaattaaacttgtattgtttctgactacgcctactgtaattatttccacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193527760|gb|FK485950.1|FK485950EST: CATGGCAGGATACTGGAATGCTGGCAGAGGCTGTGCTTCATGCTCAT GCACATGGACGTCCAA
genomic: CATGGCAGGATACTGGAATGCTGGCAGAGGCTGTGCTTCATGCTCATgtatgatttg ... tattttccagGCACATGGACGTCCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGCTGCATTTGCTGGTGCTGTTTTGGGTGACAATGCTCTGATGGAGAAAGCATGGCAGGATACTGGAATGCTGGCAGAGGCTGTGCTTCATGCTCATgtatgatttgttacgtacagctagttgatccctcaatttagtacttgtaatctgaccttgttattttccag
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