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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaaacaatgtacatgacatcagttctccacacaaactattgcttttctagttttctatttacttttttaattttggctttttattctgtcttgtacag

Basic information

species Glycine max
transcript GLYMA02G39360.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 20
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaaacaatgt--acatg---acatcagttctccacacaaactattgcttttctagttttctatttacttttttaattttggctttttattctgtcttgtacag
| | ||| ||||| || || ||||| ||||| ||||| |||||||||||||| || || || || || |||||||||||||| || |||||||| || ||||| ||    |      ||||  | |||     | || || |   |  ||  |   ||   |  |  |   | ||||| ||    |                            
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactactcctgatgttgatatgtgcgaagcaattttgtccttaacgtggcgcaccttaatatcgttctttacattcaacag---------------------------

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 20
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaaacaatgt--acatg---acatcagttctccacacaaactattgcttttctagttttctatttacttttttaattttggctttttattctgtcttgtacag
| | ||| ||||| || || ||||| ||||| ||||| |||||||||||||| || || || || || |||||||||||||| || |||||||| || ||||| ||    | |    ||||  | |||     | || || |   |  ||  |   ||   |  |  |   | ||||| ||    |                            
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactacacctgatgttgatatgtgcgaagcaattttgtccttaacgtggcgcaccttaatatcgttctttacattcaacag---------------------------

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaaacaatgtacatgacatcagttctccacacaaactattgcttttctagttttctatttac--ttttttaattttggctttttattctgtcttgtacag
||| |||||| || || || ||||| ||||| ||| | ||||| |||||||| || ||||| || || ||||||||||||||  | ||||||||||| ||||| ||  |   |  |    |   ||  ||   ||       || ||  ||  | ||  | || || |  |    |   || || ||   ||||  || | | |  ||   
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgt-tggtatttcttaaggtggcatacc-ttaatattaaatttctcaacatggcatgcattgatattaaattttctttatat-tcatag--

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 7
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaaacaatgtacatgacatcagttctccacacaaactattgcttttctagttttctatttacttttttaattttggctttttattctgtcttgtacag
| | ||| ||||| || || ||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| ||||| ||  |         ||   |   ||  | | |    | |||| | |||| | |||   |    ||  |           ||  ||||  || |      |     
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctct-------tgctgacagcag-aatgcctttctcaaatt-ttgcgtgtctttctcaaaatgcaacacacctgagttttctttacatgcaacagcgag---

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaaacaatgtacatgacatcagttctccacacaaactattgcttttctagttttctatttacttttttaattttggctttttattctgtcttgtacag
| | ||| ||||| || || ||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| ||||| ||  |         ||     |  ||   ||   || |       |  ||||   |   | | |   || |    | ||||  ||||  || |      |     
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctct----tgctgacagcggaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacacacctg---agtttt--ctttacatgcaacagcgag---

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgta---tttctta--agaaacaatgtacatgacatcagttct-------ccacacaaactattgcttttctagttttctatttacttttttaattttggctttttattctgtcttgtacag
| | ||| ||||| || || ||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| |||||   | ||||      | |    | | |  |   | || |          | |||| |    |    ||    ||   ||   |    ||     | |       ||  | |       
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag---

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 20
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttctt--aagaaacaatgtacatgacatcagttctccacacaaactattgcttttctagttttctatttacttttttaattttggctttttattctgtcttgtacag
||| ||||||| | ||||| || ||||| || ||||| |||||||| |||||||| ||||||||| ||||||||||||||||  ||||||||||||| |||||||||||  || |||  |   |  |||| | | || |   ||     | |   ||||||  ||||  |  | | |||| |                             
ATTCTGAACAGTTGGGTGTTGAGGCATGTATAAAACTGTTTGAGCAGTTCAAGTCTTATGAAGGATTATACTTTTTCTTGGGGTCATATTTGAGCTCCAGgtatttcttttaataaaagaaaaaactgactttaattttaagcattttttgtatattttcttatttttcaccttcattttgagacag------------------------