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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTGAAAGATTTCCTCGGTTCTGCTGAAGCTGATGTCCGTTCATTGGCTTCACTATATTCCAGCGTGgtaggctttctaccatatattagatcttttaaaaccatataaaggctatgctttacttgtagagtgtatgtttacag

Basic information

species Glycine max
transcript GLYMA02G36440.1
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023146|gb|CX709887.1|CX709887
EST:     GTTCTGCTGAAGCTGATGTCCGTTCATTGGCTTCACTATATTCCAGCGTG                         GGTAGGAACGTGGATAAATTGATTCTCTATTTTGGTGAAGATCCAGCTCGT
genomic: GTTCTGCTGAAGCTGATGTCCGTTCATTGGCTTCACTATATTCCAGCGTGgtaggctttc ... atgtttacagGGTAGGAACGTGGATAAATTGATTCTCTATTTTGGTGAAGATCCAGCTCGT
EST: gi|208187364|gb|GD982202.1|GD982202
EST:     GTTCTGCTGAAGCTGATGTCCGTTCATTGGCTTCACTATATTCCAGCGTG                         GGTAGGAACGTGGATAAA
genomic: GTTCTGCTGAAGCTGATGTCCGTTCATTGGCTTCACTATATTCCAGCGTGgtaggctttc ... atgtttacagGGTAGGAACGTGGATAAA
EST: gi|57574575|gb|CX547550.1|CX547550
EST:     GTTCTGCTGAAGCTGATGTCCGTTCATTGGCTTCACTATATTCCAGCGTG                         GGTAGGAACGTGGATAAATTGATTCTCTATTTTGGTGAAGATCCAGCTCGT
genomic: GTTCTGCTGAAGCTGATGTCCGTTCATTGGCTTCACTATATTCCAGCGTGgtaggctttc ... atgtttacagGGTAGGAACGTGGATAAATTGATTCTCTATTTTGGTGAAGATCCAGCTCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATTGAAAGATTTCCTCGGTTCTGCTGAAGCTGATGTCCGTTCATTGGCTTCACTATATTCCAGCGTGgtaggctttctaccatatattagatcttttaaaaccatataaaggctatgctttacttgtagagtgtatgtttacag

- - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - GCTGAT