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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag

Basic information

species Glycine max
transcript GLYMA01G38580.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 20
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtattt------ctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||||| ||||| ||||||||||| || || ||  | |||||||||||||| || || ||||| |||||||| ||         |  | |||    |||   |  |  |  || |   |  |||    | | | | |  || ||| | |||||                                  
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactactcctgatgttgatatgtgcgaagcaattttgtccttaacgtggcgcaccttaatatcgttctttacattcaacag-------------------------------

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 20
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttc------tttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||||| ||||| ||||||||||| || || ||  | |||||||||||||| || || ||||| |||||||| ||         |  | |||    |||   |  |  |  || |   |  |||    | | | | |  || ||| | |||||                                  
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactacacctgatgttgatatgtgcgaagcaattttgtccttaacgtggcgcaccttaatatcgttctttacattcaacag-------------------------------

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag
||||||| ||  | || |||||||| ||||| ||| | ||||||||||||||||| ||||| ||  | ||||||||||||||  | || |||||||||||||| ||  |  |  |      ||    ||  | | || |  |         |  |  | |  |     |  | | || |  |  ||| |||| ||| |  |   | |     
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactcttactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatatt-catag-----

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 7
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||| | ||||| ||||||||||| ||||| ||  | ||||||||||||||  | ||  ||||||||||||| || | ||||  ||      |||     |||   ||| | | ||       ||   ||| ||| |     | |||      | | |||| |||          |  |  
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctgacagcagaatg---cct---ttctcaaatt-------ttgcgtgtctttctcaaaatgcaacacacctgagttttctttacatgcaacagcgag-

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||| | ||||| ||||||||||| ||||| ||  | ||||||||||||||  | ||  ||||||||||||| || | ||||  || | || | | ||| | |    || | | ||       ||   ||| ||| |     | |||      | | |||| |||          |  |  
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctg-acagcgga-atgcctt----tctcaaatt-------ttgcgtgtctttctcaaaatgcaacacacctgagttttctttacatgcaacagcgag-

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag----------
| ||||||||| | || |||||||| ||||| ||| | ||||| ||||||||||| ||||| ||  | ||||||||||||||  | ||  ||||||||||||| || | ||||  || | || | | ||| |||   |  | |  |  || |  ||| |    |          | |  |||  | |  |    | |    | |    | |           
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctg-acagcgga-atg-cctttctcaaattttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
lower sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 6
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag
| ||||||||| | || |||||||| ||||| ||| | ||||| ||||||||||| ||||| |   | ||||||||||||||  | ||  ||||||||||||| || | |||| ||| | || | | ||| | |    || | | ||       ||   ||| ||| |     | |||      | |  ||| |||          |     
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGACCTTTACTTTTTCTTGGGATCTTATCTGAGCTCCAGgtaatt-tctcttgttg-acagcgga-atgcctt----tctcaaatt-------ttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaacag-----

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 20
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag
||||||| |||||||||||||| ||||| || ||||| ||||| || ||||| || ||||||||||||||||||||||||||  |||| ||||||||||||||||||||| | ||   |||   ||| |||| | | ||    ||    | |  |  | | | || ||||||       |||||  |                         
ATTCTGAACAGTTGGGTGTTGAGGCATGTATAAAACTGTTTGAGCAGTTCAAGTCTTATGAAGGATTATACTTTTTCTTGGGGTCATATTTGAGCTCCAGgtatttcttt-taataaaagaaaaaac-tgactttaattt-taagcattttttgtatattttcttatttttcaccttcattttgagacag----------------------