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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAGCGGGCTTTAAGAATTGCAAATGCTGCCCAACAAATGGCAAATGCAGCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAAgtaagattaacatccataatcttaagtcagcatattgttcttctttgcctcgcaactgtgtgaaatggaataatgatgtgtatgttttttctag

Basic information

species Glycine max
transcript GLYMA01G36870.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 21
TTAAGCGGGCTTTAAGAATTGCAAATGCTGCCCAACAAATGGCAAATGCAGCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAAgtaag-attaacatccataatctta----agtcagcatattgttcttctttgcc--tcgcaactgtgtgaaatggaataatgatgtgtatgttttttctag
| ||||| ||||||||||||||||||||||| ||||||||||||||||   |||| || |||| |||||| |  | ||||||  |||| || ||||| ||||||  | |  ||  | |||||| |    |||     | || ||  |   |||   |  |  || |     |   || | |||      |||  ||||   
TGAAGCGTGCTTTAAGAATTGCAAATGCTGCTCAACAAATGGCAAATGTGACACGGGGAAGCAGTGGATCTGCCACGCTCTTTGTTGAAATTTTGAACAAgtaaatagttgcacacctaatctaactgaagttcctctttttttagttactgcaggtttcgccttttaattacaaaagattgagaaacttgtactttcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669361|gb|BE190468.1|BE190468
EST:     GCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTAT
genomic: GCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTAT
EST: gi|12689556|gb|BG155892.1|BG155892
EST:     GCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGGCTA
genomic: GCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTG-CTA
EST: gi|208210216|gb|GE002695.1|GE002695
EST:     GCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTAT
genomic: GCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTAT
EST: gi|7478101|gb|AW666136.1|AW666136
EST:     GCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTAT
genomic: GCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTAT