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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCTCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACCGgtatgatctttactctctataaagagcttaaaccaaagagcatgcacacgtgcaagatcacagtgttccttggcgtgtgcgaaattcgggaaatatggat...

Basic information

species Glycine max
transcript GLYMA20G38420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38420.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G55240.1 (Arabidopsis thaliana), 5'ss of exon 2
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCTCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACCGgtatgatctttactctctataaagagcttaaaccaaagagcatgcacacgtgcaagatcacagtg--ttccttggcgtgtgcgaaattcgggaaatatggat
||  |||| ||||| ||||||||||| || |||| ||| ||||| ||  |||||||||||||||| |||||||| || | |||| | || || || || ||| | |  |   |||||| |      ||       || |   |  ||   | |   |||    |     |     | | |  | |  |  | |       | 
CACATGATAGAGAAATGTTTGATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCACTCCTGTCATCACCTCTACTGgttttaattcctctctctctctctc-ctcttttttaatactttttacctttccgtaatccttataaacacacaaacatatctgtacctatgtactctctaa-

upper sequence: GLYMA20G38420.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G28990.1 (Arabidopsis thaliana), 5'ss of exon 2
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCTCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACCGgtatgatctttactctctataaagagcttaaaccaaagagcatgcacacgtgcaagatcacagtgttccttggcgtgtgcgaaattcgggaaatatggat----
||  |||| ||||  ||||||| |||| |||||| ||| || ||||||||||||||||||||  |  ||||||| || ||||| || || || ||||| ||| ||  | |  ||    |||     | || |    |     |  || ||  |   ||  || ||||  |||||    |  |   |    |  | || ||    
CACATGATAGAGACATGTTTGACCTTTAACATGAGCAAAGAGGAATGCATGGAAGCTCTCTCAGAGAATGCAAACATCAATCCCATCATCACGTCCACTGgtttggacctctcttatcatattttccatacatttgatgcattttactcgatc---attccaatgttttttggcactggtcaccgttat-atttttgaatatgt

upper sequence: GLYMA20G38420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0317g00030.t01 (Vitis vinifera), 5'ss of exon 2
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCTCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACCGgtatg-atctttactctctataaagagcttaaaccaaagagcatgcacacgtgcaagatcacagtgttccttggcgtgtgcgaaattcgg--gaaatatggat
|| || || ||||| ||||||||||| |||||||  || ||||| ||||||||||| ||||| ||||||||||| ||  | ||  | || || || ||||||  | || |||    | | |     | |      ||| | |  |  |   |  || |  |  || ||    |     |  || ||||      |   | |||
CACCTAATAGAGAATTGTTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAAACATCGAACCCGTCATCACCTCTACCGgttagtatttttcgagtttgtttgatggtgtttttaaaaaacg-gttctaatttaaaa--agtgtttttaaagaaaaattagatattcaattatagcgtcgat

upper sequence: GLYMA20G38420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0036g00440.t01 (Vitis vinifera), 5'ss of exon 2
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCTCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACCGgtatga-tctttactctctataaagagcttaaac------------caaagagcat-gcacacgtgcaagatcacagtgttccttggcgtgtgcgaaattcgggaaatatggat------
|| ||||||||||| ||||||||||| ||||||||||| ||| | ||||||||||| || || ||||||||  | ||  | ||  | || || || || |||  |  |||||| |||| |  |  ||| ||  |               | |||||    || ||| | | |  |    |||  |      |   | | | |  |  | |||        
CACCTGATCGAGAAATGTTTGATCTTCCACATGACCAAAGAACAGTGCATGGAAGCCCTTTCCAAACATGCTGACATCCAACCAGTCATCACGTCTACTGgttagcctctttaatctccaagaccagcctactcgctgtcttttcctgcatagcatcatgcatgtgtatgttttct-ccttctctaaatcatataatactggtaacctgtggccctgcag

upper sequence: GLYMA20G38420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0317g00020.t01 (Vitis vinifera), 5'ss of exon 2
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCTCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACCGgtatgatctttactctctataaagagcttaaaccaaagagcatgcacacgtgcaagatcacagtgttccttggcg-tgtgcgaaattcgggaaatatggat----
|| ||||| |||||||| |||||||| |||||||  || ||||| ||||||||||| ||||| ||||||||| | || || |   | || || |||||||||  | || ||    ||    | ||   |    | | | |  |||         | || ||   || |  | |   | |       |    |  ||||  |    
CACCTGATAGAGAAGTGCTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAGACATCAACCAAGTCATCACCTCCACCGgttagctcctttagatcatgcacgaatctctctctatgtgtttgcctttcgttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcag