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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAATTAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGgtatgcaatgttattcagttccttctttcatttggtactacagctgctaagactgttctaacttaagttttcttcaaaaagtgatttttattatcaattcattataaagtttggatcttcattttctcacatgattttgacaaacccgtttttatcag

Basic information

species Glycine max
transcript GLYMA20G37930.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37930.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0525g00010.t01 (Vitis vinifera), 5'ss of exon 1
-------------------TTTGGAATTAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGgtatgcaatgttattcagttccttctttcatttggtactacagctgctaagactgttctaac-ttaagttttcttcaaaaagtgatttttattatcaattcatt--ataaagtttggatcttcattttctcacatgattttgacaaacccgtttttatcag
                   |||||||| |  ||||||||||||||| |||||||||| || ||||| || || ||||| ||||||||||||      || ||  |  | || | ||||   |    |||    |  |   || |||| | | | || |||          | ||   |  || || | |  ||| ||| |                                              
TCCATGTTATCTGTGGCAGTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAGgtatgc-----catccaactagtcctattatttaagatactagcaa--agaataattttaacgtcatgcttgctttt--------tcttggctgccagtttaattaatagagtat----------------------------------------------

upper sequence: GLYMA20G37930.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0441g00010.t01 (Vitis vinifera), 5'ss of exon 7
TTTGGAATTAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGgtatgcaatgttattcagttccttctttcatttggtactacagc----tgctaagactgttctaacttaagttttcttcaaaaagtgatttttattatcaattcattataaagtttggatcttcattttctcac------atgattttgacaaacccgtttttatcag---------------------
|||||||| |  ||||||||||||||| |||||||||| || ||||| || || ||||| ||||||||||||  |   | |       || ||| |  |  ||  | ||     |  |||     | ||  |||    ||           | | |  ||   |   || ||| ||    | || |  | |||  || |       |  | || |  ||  || | ||| | |                      
TTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAGgtatgccgtccaactagtccaattatttaagatactagcaaagaataattttaatgtcatgcttgctttttcttggccgccggtttaactaatagagtatgttaattgtagtaatgggttaataattacctaatcactaaacaaattcgggaattccttattttttatgtggttactgctttttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053352|gb|BM732019.1|BM732019
EST:     CTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAG                         GAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAG
genomic: CTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGgtatgcaatg ... tttttatcagGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAG
EST: gi|192332835|gb|FK026836.1|FK026836
EST:     CTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAG                         GAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAG
genomic: CTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGgtatgcaatg ... tttttatcagGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAG
EST: gi|8404288|gb|BE059922.1|BE059922
EST:     CTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAG                         GAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAG
genomic: CTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGgtatgcaatg ... tttttatcagGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAG