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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACGAGTCAGAAAGAAGGAGCAGTCACTGGTGGCCCGGCTTTTGTTGAAGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTGgtacttgcaagtttgtattatttacaagagtttaattgtcatagtacaaagatttctataatatactataggattaggaatctacgacttttaaagtaat...

Basic information

species Glycine max
transcript GLYMA20G37520.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37520.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G54780.1 (Arabidopsis thaliana), 5'ss of exon 2
GTCACGAGTCAGAAAGAAGGAGCAGTCACTGGTGGCCCGGCTTTTGTTGAAGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTGgta-----cttgcaagtttgtattatttaca-agagtttaattgtcatagtacaaagatttctataatatactataggattaggaatctacgacttttaaagtaat
 | || |||||||| ||||||||  | |||||||| || |||||| |||||||||| || ||||| || ||||||||||||||||| || || ||||| ||||     ||   |   | || |  | || | | ||| || || |   | |   | |  |  | || |   | | |  |  |  || |||    |||         
ATAACAAGTCAGAAGGAAGGAGCTATTACTGGTGGTCCTGCTTTTATTGAAGCTGTTGGTGAAAACATTCTTGATGCTACCGTCTCCGAAAATCTTCCCGgtatggttctattactctagtttagtatatatatagtgtacttttggaattttgatgcatcatctagtgcccaagacaaaaacaaaactagaggtttggt------

upper sequence: GLYMA20G37520.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0128g00050.t01 (Vitis vinifera), 5'ss of exon 2
GTCACGAGTCAGAAAGAAGGAGCAGTCACTGGTGGCCCGGCTTTTGTTGAAGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTGgtacttgcaagtttgtatta--tttacaagagtttaattgtcatagtacaaagatttctataatatactataggattaggaatctacgacttttaaagtaat
||||| ||||| |||||||||||||||||||||||||| || |||||  | ||||| || || |  || ||||||||||| || |||||||||||||| ||||     |  |||   ||   ||   || | | |   |||| |  |      ||    | ||  |   || |  |||  | | || |   ||  ||   | 
GTCACCAGTCAAAAAGAAGGAGCAGTCACTGGTGGCCCTGCCTTTGTCCAGGCTGTTGGTGATACCATTCTTGATGCTACAGTATCAGAGAACCTTCCGGgtataaaaacatttcctttcacttcttaaaattctggctgtcttgttgtttt-atcatcaaaagcttgaatggttttaacactttaaggaattccaaaaga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296100|gb|FG989460.1|FG989460
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTG                         T-TTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|193326943|gb|FK287826.1|FK287826
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|6134161|gb|AW132554.1|AW132554
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTG                         TATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTTTAGCACTGCTAAAC
EST: gi|11413879|gb|BF425890.1|BF425890
EST:     AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTG                         TATTGGCTACGGATGAGAAG
genomic: AGCTGTGGGGGAAAAGATCCTTGATGCTACCGTCTCAGAGAACCTTCCTGgtacttgcaa ... atatatgcagTATTGGCTACGGATGAGAAG