Sequence
atgc intronic sequence ATGC exonic sequenceCATGAACTTATTTGTGGCACTTCTTTGTGGTTGTATTGTCCTTGGCCATCTTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCTCTTTTGATTgtaagtcttcactgaccttgagcttgtttgccataagctgttgttctaaagaatcggttaaattaaatgtttacaaaatgatctttgttgtttgccaatg...
Basic information
species | Glycine max |
transcript | GLYMA20G37370.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 1
CATGAACTTATTTGTGGCACTTCTTTGTGGTTGTATTGTCCTTGGCCATCTTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCTCTTTTGATTgtaagtcttca--ctgaccttgagcttgtttgccataagctgttgttctaaagaatcggttaaattaaatgtttacaaaatgatctttgttgtttgccaatg
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CATCAATCTATTTGTGGCACTCCTTTGTGGTTGCATTGTGATTGGTCATCTTCTTGAGGAGAACCGGTGGGTGAATGAGTCAATCACTGCCCTTGTGATTgtgagtctctgatcttattttacact-gtgtgctaaaaaactctggtcaagacaagaatataaaataa-tgcttatattttatttaaggataacaaagaact
upper sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S113_117V6.2 (Physcomitrella patens), 5'ss of exon 1
CATGAACTTATTTGTGGCACTTCTTTGTGGTTGTATTGTCCTTGGCCATCTTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCTCTTTTGATTgtaagtctt--cactgaccttgag--cttgtttgccataagctgttgttctaaagaatcggttaaattaaatgtttacaaaatgatctttgttgtttgccaatg-
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AATCTGTCTCTTTGTATTTTTACTATGTGCGTGCATTGTGTTTGGCCACCTTTTGGAGGAAAATCGGTGGATGAATGAGTCTATCACTGCTCTTCTTCTGgtgagttttgatattcaattcaagaactcgtccttggaaagctggtgggattctaatacaggtg---tgattggtta--aaattctttgtgttttagtccatttc
upper sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S169_48V6.1 (Physcomitrella patens), 5'ss of exon 1
CATGAACTTATTTGTGGCACTTCTTTGTGGTTGTATTGTCCTTGGCCATCTTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCTCTTTTGATTgtaagtcttcac-tgaccttgagcttgtttgccataagctgttgttctaaagaatcggttaaattaaatgtttacaaaatgatctttgttgtttgccaatg---------------------------------------------------------------------------------------------------
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AATCTGTCTCTTTGTATTTTTACTCTGTGCGTGCATTGTGCTGGGGCACCTTCTGGAGGAAAATCGGTGGATGAATGAGTCTATTACTGCTCTTCTTCTGgtgagtactgatgtgtggttgagga-atttatacttggtt-ttctgttgggcacttaaataagtgtattttttattttttaattttttttattt--taatttctctctctctctctctctctctcttttcgtgagcctaagttttggaggtataatagagtagggagtagaatctgatgttctgtatttgaattgtacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192294540|gb|FG987469.1|FG987469EST: TTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCTCTTTTGATT GGTGTTTGCACTGGCATAGTCATTTTGCTGTTTAGTGGTGGCAAA-GCTCG
genomic: TTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCTCTTTTGATTgtaagtcttc ... ttgttctcagGGTGTTTGCACTGGCATAGTCATTTTGCTGTTTAGTGGTGGCAAAAGCTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGAACTTATTTGTGGCACTTCTTTGTGGTTGTATTGTCCTTGGCCATCTTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCTCTTTTGATTgtaagtcttcactgaccttgagcttgtttgccataagctgttgttctaaagaatcggttaaattaaatgtttacaaaatgatctttgttgtttgccaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa