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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCGTAGGCCTGGGTATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATgtaagatcctttctttggtatatctatgatctatcactattctgataaggcaattaaattggatcttctgagtgcacaaatatcgggccctctatggcag...

Basic information

species Glycine max
transcript GLYMA20G28970.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 1
TGCTCGTAGGCCTGGGTATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATgtaagatcctttctttggtatatct-atgatctatcactattctgataaggcaattaaattggatcttctgagtgcacaaatatcgggccctctatggcag
||| | |||||| |||||||| ||| |||| |||||||| ||||||||||| ||||| |||||| | ||||||||||| ||||||||||| || ||||||||||| ||  ||||||| ||  | | ||| |  |    | |   ||  |         ||    ||   || ||       | ||    |   |  | |  
TGCACCTAGGCCCGGGTATGGTCAACTTGGAACAAAATGTATTGTGAAGGCCAACCATTTCTTTACTGAGTTACCAGAGAAGGACTTGAATCAGTATGATgtaagctctcttctttgataggttttatggtaaacacatttgtcgagtatattgcagcataaattcaaatgggtttttgtttgtcttaactgttgggacc-

upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ19863 (Selaginella moellendorffii), 5'ss of exon 1
TGCTCGTAGGCCTGGGTATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATgtaagatcctttctttggtatatctatgatctatcactattctgataaggcaattaaattggatcttctgagtgcacaaatatcgggccctctatggcag
| | |  ||||| ||     | |||   |||   || |||||||| ||||| || ||||||||||||||| ||||||| |||||  |  |||| ||||||||||| | |||  | |         | || |||    | ||   ||    |||||   |||    || ||  ||| ||                      
TCCGCTGAGGCCCGGACGCAGCCAAACGGGGGTTAAGTGCATTGTCAAGGCGAATCACTTCTTTGCAGAGCTACCAGATAAGGATCTACACCACTATGATgtaagtttcttcttgt--------cacgagctag---tgtttgcatc---caattggcttg----ttttgcttgcgcag---------------------