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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATGGTAGCAGTAATTACTCGGAGATGAATTATGTTAGGGAGGAGCTTGAATTTGCGGGAAGGCTCTTTGCACAGAGCCCTCTTTGGCCAGTCATCGgtaacaaatttattttacccaagttctcatttctgtcgtctttgatgttacattagttcatgaaaaggggttggaaaatgttagcttaaaactaatgcttattatgtcttaatttgttatctaattacag

Basic information

species Glycine max
transcript GLYMA20G27860.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343705|gb|GR857461.1|GR857461
EST:     TGAATTTGCGGGAAGGCTCTTTGCACAGAGCCCTCTTTGGCCAGTCATCG                         ATGTGACTGGAAAAGCCATAGAAGAGACTGCAGCAGTTGTATTGAGGCTGT
genomic: TGAATTTGCGGGAAGGCTCTTTGCACAGAGCCCTCTTTGGCCAGTCATCGgtaacaaatt ... ctaattacagATGTGACTGGAAAAGCCATAGAAGAGACTGCAGCAGTTGTATTGAGGCTGT
EST: gi|17518770|gb|BM187812.1|BM187812
EST:     TGAATTTGCGGGAAGGCTCTTTGCACAGAGCCCTCTTTGGCCAGTCATCG                         ATGTGACTGGAAAAGCCATAGAAGAGACTGCAGCAGTTGTATTG
genomic: TGAATTTGCGGGAAGGCTCTTTGCACAGAGCCCTCTTTGGCCAGTCATCGgtaacaaatt ... ctaattacagATGTGACTGGAAAAGCCATAGAAGAGACTGCAGCAGTTGTATTG
EST: gi|209714750|gb|BW674275.1|BW674275
EST:     TGAATTTGCGGGAAGGCTCTTTGCACAGAGCCCTCTTTGGCCAGTCATCG                         ATGTGACTGGAAAAGCCATAGAAGAGACTGCAGCAGTTGTATTGAGGCTGT
genomic: TGAATTTGCGGGAAGGCTCTTTGCACAGAGCCCTCTTTGGCCAGTCATCGgtaacaaatt ... ctaattacagATGTGACTGGAAAAGCCATAGAAGAGACTGCAGCAGTTGTATTGAGGCTGT