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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTACCCTTTTTTGGCTGAACACATGGCTGATTTCATGGCGAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataaccttacccttgtcactttattgacaagttagatgagggaatttctaaacatgttaggatgtatatatgctagaagtttaattcgttttgtctct...

Basic information

species Glycine max
transcript GLYMA20G26580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G26580.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G49820.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGTACCCTTTTTTGGCTGAACACATGGCTGATTTCATGGCGAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataaccttacccttgtcactttattgacaagttagatgagggaatttctaaacatgttaggatgtatatatgctagaagtttaattcgttttgtctct
||||| |||||  | || || |||||| |||||| |||||||||||| ||||||||||| ||||| || |  |     ||  | || |||| | | |  |||  ||      |      | |||||| || ||| |    | |  ||       | ||| ||   || | | |  |    || ||               
GAGTATCCTTTCCTCGCAGACCACATGTCTGATTACATGGCGAAGACTCTCTTCTTCACTTCTCTCCTCTATCACGATACCACAGAGCACAGAAGAGCAGgttcaaaaccctcacatctattttatttactagtca----atgttatcgtgttgcttgt-agtgagtgtcttttgtgtttgtgtag--------------

upper sequence: GLYMA20G26580.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0091g00080.t01 (Vitis vinifera), 5'ss of exon 2
GAGTACCCTTTTTTGGCTGAACACATGGCTGATTTCATGGCGAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataaccttacccttgtcactttattgacaagttagatgagggaatttctaaacatgttaggatgtatatatgctagaagtttaattcgttttgtctct------
|||||||||||  | |||||||||||| |||| || ||||||| ||| || |||||||| ||||| || | || |  |||  | || |||||||| |  |||| |  |||     | | | ||  ||  | || |  ||       ||  | ||| |  | |  | |  || |  |   | | |  || |  |||   |       
GAGTACCCTTTGCTTGCTGAACACATGTCTGAGTTTATGGCGAGGACTCTTTTCTTCACATCTCTTCTATACCATGACACAACCGAGCACAAACGTGCAGgtaaatgctttttgatataatttgttt--cgaggttcat----agtttcatgaacgttctggtcttttgatttttttagattattctttgaattgaagcataggat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105634567|gb|DW247599.1|DW247599
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|151408064|gb|EV277872.1|EV277872
EST:     CTTCTTCGCGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|6567066|gb|AW234693.1|AW234693
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACG                         TTGCCGAATTNTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|18040792|gb|BM309086.1|BM309086
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|192324081|gb|FK019372.1|FK019372
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|254322009|gb|GR837423.1|GR837423
EST:     CACAAACGGGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|213594296|gb|DB969974.1|DB969974
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACG-----                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|24205958|gb|BU965211.1|BU965211
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|192298387|gb|FG988433.1|FG988433
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|8825853|gb|BE209583.1|BE209583
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACG                         TTGCCGAATGTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAAGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|10232185|gb|BE801081.1|BE801081
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACTGCTGACCACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
EST: gi|254332676|gb|GR844046.1|GR844046
EST:     CACAAACGGGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG
genomic: CACAAACGGGACGgtataacctt ... cttcatgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTCG