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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGCAATGACCATTGTTGAGATAGTTGACACTCATGGAGGATTTAAGCTGGTTACAGACAATATAACAACCCAAAACCCACGCCTTCTCCTATGGGTGgtaagtgctttcactgctctgtcactgcattgttgttcaacattacagtctatggtcaaatttggatgaaacacacaagagaaggggctcagattcaaga...

Basic information

species Glycine max
transcript GLYMA20G26550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G26550.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os09g02214.1 (Oryza sativa), 5'ss of exon 4
TGGTGCAATGACCATTGTTGAGATAGTTGACACTCATGGAGGATTTAAGCTGGTTACAGACAATATAACAACCCAAAACCCACGCCTTCTCCTATGGGTGgtaagtgctttcactgctctgtcactgcattg-ttgttcaacattacagtctatggtcaaatttggatgaaacacacaagagaaggggctcagattcaaga---
 ||||||||||||||||||||||| |||||  | |||  |||||||||||| || || ||||||||| | || | ||| ||| |   ||| || |||||||| |||  |||   |  |   |   ||| ||| |  || || |||    | ||| |  | ||| | ||     | | |     |  | |  |  |||||     
CGGTGCAATGACCATTGTTGAGATTGTTGATGCACATCAAGGATTTAAGCTAGTGACTGACAATATATCTACTCGAAATCCAAGAACTCTTCTCTGGGTGgtgagttttttgttttttacata--tgctttgatcattgaatattctgttatattggtagatt-gtatacgctata-attctcaatgacataatttcaatggat

upper sequence: GLYMA20G26550.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G49810.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTGCAATGACCATTGTTGAGATAGTTGACACTCATGGAGGATTTAAGCTGGTTACAGACAATATAACAACCCAAAACCCACGCCTTCTCCTATGGGTGgtaa----gtgctttcactgctctgtcactgcatt---gttgttcaacattacagtctatggtcaaatttgga---tgaaacacacaagagaaggggctcagattcaaga------------
 || |||||||||||||| || ||| ||||  |||||  |||||||||||||||||||||   ||||||| |    || ||     | ||  |||||||||||     || |  |  ||  | |||   ||| |    | | ||     | |   | |  | |    | |      |    | | ||  |        | ||||| | |             
CGGAGCAATGACCATTGTGGAAATAATTGATGCTCATCAAGGATTTAAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGGTGgtatttttgttccatttcttatttgtttttgcttccaagctttttggtttgaggatatgagttttcttctttgctcttgctctcgcattatcttcactttagatttatggtttcgttttcag

upper sequence: GLYMA20G26550.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G19490.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGTGCAATGACCATTGTTGAGATAGTTGACACTCATGGAGGATTTAAGCTGGTTACAGACAATATAACAACCCAAAACCCACGCCTTCTCCTATGGGTGgtaagtgctttcactgctctgtcactgcattgttgttcaacattacagtctatggtcaaatttggatgaaacacacaagagaaggggctcagattcaaga
||| |||||||||||||| |||||||||||  ||||   ||| |||||| |||||||||||||||| || || |  || |||      ||  ||||||||||| ||| ||| ||||     | |  |   |    |||    |     ||| |    | ||     |       |       | ||  ||  |       
TGGCGCAATGACCATTGTGGAGATAGTTGATGCTCACCAAGGGTTTAAGTTGGTTACAGACAATATCACCACTCGGAAGCCAAAGACACTTTTATGGGTGgtatgtgattt-actgtagcttgaaagttattagcttctgtgtcttcttctttaaggacatgaatttcctttttattgatttatggcgtcgcag------

upper sequence: GLYMA20G26550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0180g00120.t01 (Vitis vinifera), 5'ss of exon 4
TGGTGCAATGACCATTGTTGAGATAGTTGACACTCATGGAGGATTTAAGCTGGTTACAGACAATATAACAACCCAAAACCCACGCCTTCTCCTATGGGTGgtaagtgctttcactgctctgtcactgcattgttgttcaacattacagtctatggtcaaatttggatgaaacacacaagagaaggggctcagattcaaga----
|||||||||||||||||||||||| |||||  |||||  ||| |||||||||||||| |||||||||||||| |  || ||||    ||| || |||||||| |||||||| | | |   |  ||    ||  | || ||| | | |   | |   |  |||    |   |||   | |   |   | |    || | |     
TGGTGCAATGACCATTGTTGAGATTGTTGATGCTCATCAAGGGTTTAAGCTGGTTACTGACAATATAACAACTCGCAAGCCACAAACTCTACTTTGGGTGgtgagtgcttt-atttcatggcaacaatgtttcttttgaacttcagatattttaaccttattc---ttggacattaatgttgacatggtatttttgatgttttt