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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACCTGTGTGAGAGATAAAGCTGTGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCATTGGTGAAGgtcagttaatgttttttcatcaatataaatgattttattgttacttcatgtgaaatccatcatgaatgttacagaaattttttccttttcactcatggtt...

Basic information

species Glycine max
transcript GLYMA20G24790.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 2
GGAAACCTGTGTGAGAGATAAAGCTGTGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCATTGGTGAAGgtcagttaatgttttttcatcaatataaatgattttattgttacttcatgtgaaatccatcatgaatgttacagaaattttttccttttcactcatggtt
 || || ||||||||||| ||||||||||| || |||||||  ||||||||||| ||||  |||| |||| | ||||||| ||   | ||  | |||||||| |||| | |   |||    |  |  |  ||||     |||   | | ||    || ||||    | ||       |||| |  |||   ||  | |  
AGAGACTTGTGTGAGAGAAAAAGCTGTGGAATCGCTTTGTAAGATTGGATCTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGgttagtttaggagatttatgtagcacta--gattacgccgttttgtta-gttggttcaatcaaagcttttttttttgttttgttgtttgt-cttgtag--

upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 2
GGAAACCTGTGTGAGAGATAAAGCTGTGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCATTGGTGAAGgtcagttaatgttttttcatcaatataaatga-ttttattgttacttcatgtgaaatccatcatgaatgttacagaaattttttccttttcactcatggtt
|||||| || ||||| || ||||||||||| |||||||||||||||||  |||| |||||||||||||| ||||||||  ||| ||  ||  |||  ||||| || ||| | |  || |   || | |   | | |  ||| |   |  | |  | ||| |         |    ||| ||  |  | || |  ||     
GGAAACTTGCGTGAGGGAGAAAGCTGTGGATTCACTTTGTAGAATTGGTGCTCAGATGAGGGAGAGTGACTTGGTTGAGCATTTCACTCCTCTGGCTAAGgttagataaggctggtttacttattttatcaaatctctttggtcgattttattgattcctttccatgctctgtc-aaacttaatattattaagccactaaa

upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 1
GGAAACCTGTGTGAGAGATAAAGCTGTGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCATTGGTGAAGgtcagttaatgttttttcatcaatataaatgattttattgttacttcatgtgaaatccatcatgaatgttacagaaattttttccttttcactcatggtt-
||||||| ||||||| |||||||| ||||||||  | ||||||||||| |||||||||| ||| | ||||||| || | |  |  || || ||||||||||| | ||||   ||     || |  |   |  |||| || |        |||       | || | | ||   |   |||| |  |||      |    | 
GGAAACCCGTGTGAGGGATAAAGCCGTGGAGTCTTTGTGTAGAATTGGTTCTCAAATGAAGGAAAATGATTTGATTAACTGGTTTATTCCTTTGGTGAAGgtgacttaactgttaccattctacttttgtattttttttttggtggggggtgttgcttcttatta-ttttgtgggggttttgtaatttctgggtaaaaatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203829|gb|BI426597.1|BI426597
EST:     GTTGAATATTACATCCCATTGGTGAAG                         AGATTGGCAGCAGGTGAATGGTTTACCGCCCGAGTCTCTGCATGTGGACTA
genomic: GTTGAATATTACATCCCATTGGTGAAGgtcagttaat ... ttttgttcagAGATTGGCAGCAGGTGAATGGTTTACCGCCCGAGTCTCTGCATGTGGACTA