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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCCGGCCCTTATGGTACCTTCATCGGTGTCTATGATGGCCATGGAGGGCCCGAGACATCACGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttggcaacaaaatgactgaattcttcaagttttttctgcattggaatggtttttactttttgccttgctgtatttttctctgccttccagttcca...

Basic information

species Glycine max
transcript GLYMA20G24100.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24100.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g02650.t01 (Vitis vinifera), 5'ss of exon 2
GAATCCGGCCCTTATGGTACCTTCATCGGTGTCTATGATGGCCATGGAGGGCCCGAGACATCACGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttg--gcaacaaaat---gactgaattcttcaagttttttctgcattggaatggtttttactttttgccttgctgtatttttct--ctgccttccagttcca
|| || |||||||||||||||||  | ||  | |||||||| ||||| || ||||||||  | ||||  |||||||||||||| || || |||||||||||||||||   |||||   ||    | |     ||||||  |||||||    || | ||| | |   | |||    |   | |||||  |  |||||  || |     
GAGTCTGGCCCTTATGGTACCTTTGTTGGAATTTATGATGGGCATGGTGGACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttactgcaactgtattgcaatttggaacttcaa--tttttcttagctgcattggctgtatatgtttatggtaaagaattttcttacctgccaaccgg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238100|gb|BE806988.1|BE806988
EST:     GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: GCCCGAGACATCACGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttggc ... taaatttcagGATTCACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: gi|17519473|gb|BM188515.1|BM188515
EST:     GCCCGAGACATCACGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTCACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: GCCCGAGACATCACGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttggc ... taaatttcagGATTCACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: gi|308098935|gb|HO760776.1|HO760776
EST:     GCCCGAGACATCACGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTCACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: GCCCGAGACATCACGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttggc ... taaatttcagGATTCACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: gi|193436356|gb|FK400800.1|FK400800
EST:     TCACCTATTTCACCATCTCAAGA                         GATTCACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: TCACCTATTTCACCATCTCAAGAgtaagttggc ... taaatttcagGATTCACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: gi|7924076|gb|AW830084.1|AW830084
EST:     CCGAGACATCACGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTCACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: CCGAGACATCACGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttggc ... taaatttcagGATTCACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC