Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACCTGGCTGGGGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaattgctatattgaacagtcttgtattatttcttgctcatgtttatttttggctaaaattgatattaagatatgtttgtttttggctgaatgttgatatctatgcag

Basic information

species Glycine max
transcript GLYMA20G23080.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g14270.2 (Oryza sativa), 5'ss of exon 2
GGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACCTGGCTGGGGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaattgctatattgaacagtcttgtattatttcttgctcatgtttatttttgg-ctaaaattgatattaagatatgtttgtttttggctgaatgttgatatctatgcag
| || ||| ||||| || ||||| ||||| || ||||||||| ||||||| || ||||||||||| |||||  | |||||||||||  || | |||||||||||| |  |     | ||  |     ||  |       ||  |  ||| || ||  ||   ||   ||  | ||                                         
GAAAGTCGGTGGGTCAAGTCAGAATGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga-----agatcaatacacctcattcagacactaacagatgatttttactgaattatttttcttgttgcag-------------------------------------

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 2
GGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACCTGGCTGGGGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaattgctatattgaacagtcttgtattatttcttgctcatgtttatttttggctaaaattgatattaagatatgtttgtttttggctgaatgttgatatctatgcag
| || ||| ||||| || || || ||||| || ||||||||| ||||||| || |||||||||||||| ||  ||||||||||||| ||  | |||||||||||| |        | ||   |   |      ||     ||  | |||    ||  |    |   ||  | ||                                         
GAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGAGGACAAAGgtaaatt---ccaaaacatcagaagattggtggtttcagtttatttatga--gttactcaacacgtttcttgttgcag-------------------------------------

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G074687_T01 (Zea mays), 5'ss of exon 2
GGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACCTGGCTGGGGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaact-aaattgctatattgaacagtcttgtattatttcttgctcatgtttatttttggctaaaattgatattaagatatgtttgtttttggctgaatgttgatatctatgcag
| || ||| ||||| || || || |||||||| || || ||| ||||||| || |||||||||||||| ||  ||||||||||||| ||  | ||||||||| || | |||  |  | |  |||  ||  | |    ||| ||  | |  |   |||   | |  |                                                  
GAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACATGGCTGGTGAATGGAACCACACCTCGGGGAAATGGAATGGAGATGCAGAGGACAAAGgttaattcaaaacgtcagaa-gaatggtgattt-cagtttattagtta-atacgtttcatgttgcag-------------------------------------------------

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 5'ss of exon 2
GGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACCTGGCTGGGGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaattgctatattgaacagtcttgtattatttcttgctcatgtttatttttggctaa-aattgatattaagatatgtttgtttttggctgaatgt--tgatatctatgcag
|  |||   ||||||||||| || ||||| |||||||||||| |||||||||| |||||| ||||||||||  ||||| |||||||| | || || |||||||       ||  | |  |  ||| |||| ||    ||   |   ||||||  || |   ||  ||||   | |  || |||| |   ||    ||| |    || | |  ||  ||
GAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACATGGCTGGGGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgta-------ttattttcatacacattcttatacctatttggggcaatgtttcattctctttattaatttggactttgaaatgtgtaacttgatttgacttcaatggtctggatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600783|gb|DB956217.1|DB956217
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|254332429|gb|GR843906.1|GR843906
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|193449775|gb|FK413450.1|FK413450
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|209719566|gb|BW651018.1|BW651018
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|209711757|gb|BW678939.1|BW678939
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|213613490|gb|DB956948.1|DB956948
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|213587860|gb|DB959684.1|DB959684
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|5770360|gb|AI973534.1|AI973534
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|208318470|gb|GE114157.1|GE114157
EST:     AATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: AATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|193489313|gb|FK455778.1|FK455778
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|208226356|gb|GE023121.1|GE023121
EST:     TGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: TGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|213599236|gb|DB960004.1|DB960004
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|17401784|gb|BM178566.1|BM178566
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|21595442|gb|BQ610481.1|BQ610481
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|6666007|gb|AW277466.1|AW277466
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|7283812|gb|AW596414.1|AW596414
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|17023092|gb|BM094126.1|BM094126
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|24135667|gb|BU926177.1|BU926177
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|24136611|gb|BU927121.1|BU927121
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|7692393|gb|AW760501.1|AW760501
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|208157357|gb|GD955931.1|GD955931
EST:     GGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|6454145|gb|AW184893.1|AW184893
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|213611686|gb|DB969074.1|DB969074
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|208224826|gb|GE027653.1|GE027653
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|9264547|gb|BE352694.1|BE352694
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|18692916|gb|BM521764.1|BM521764
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|208038987|gb|GD832829.1|GD832829
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|254315486|gb|GR825295.1|GR825295
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|14990872|gb|BI316545.1|BI316545
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCATTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|48575042|gb|CO036205.1|CO036205
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTGAGTAC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTAC
EST: gi|254348788|gb|GR852467.1|GR852467
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|15813480|gb|BI785755.1|BI785755
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|209721183|gb|BW659195.1|BW659195
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|18692767|gb|BM521615.1|BM521615
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|209698331|gb|BW678062.1|BW678062
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|15203196|gb|BI425964.1|BI425964
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|10710585|gb|BF010303.1|BF010303
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
EST: gi|213617209|gb|DB965164.1|DB965164
EST:     GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC
genomic: GGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaa ... atctatgcagGTATTCAAACCAGTGAGGATTACAGATTCTACGCTATTTCAGCTCAGTACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACCTGGCTGGGGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAACGACAAAGgtaaactaaattgctatattgaacagtcttgtattatttcttgctcatgtttatttttggctaaaattgatattaagatatgtttgtttttggctgaatgttgatatctatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA