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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgctttgtaatgagtcaattgttctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag

Basic information

species Glycine max
transcript GLYMA20G21250.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21250.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g08090.1 (Oryza sativa), 5'ss of exon 2
ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgctttgtaatgagtcaattgttctactgttatttccctgtta--cactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag
||| | ||||||||||| |||||||||||||||||  |||| |||||||| || ||||| ||||| |||||||| ||||| ||||| ||||   ||||    ||||     |   || ||  |  |||| |||      | ||   | |   |||||||  |  ||||  |    | | || ||   ||                                     
ACTGTGCCAGTTAACCCGAAGCCTTTCTTGAACAACCTGACAGGGAAGCCTGTCATTGTCAAACTTAAGTGGGGTATGGAATACAAAGgta-atctata---cttttacccgtcacattttattcactgatatgcttaggctagtgattgaaatttcagaatgaaatctctgaggttt-caggaacattgaaa---------------------------------

upper sequence: GLYMA20G21250.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g43620.1 (Oryza sativa), 5'ss of exon 2
ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgctttgtaatgagtcaattgttctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag
||| ||||||||||||| || ||||||||||||||  |||| |||||||| || ||||| ||||| |||||||| ||||| ||||| ||||   ||||  |  |||    |   ||| || |||| |  ||||| |    |||  |      || |   ||| |   | |  |  |    |||||      |||                              
ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTGTCATTGTCAAACTTAAGTGGGGTATGGAATACAAAGgta-atctatact--tttacctt---tcacttcttcttcacttattacatgcttaagccagtgcttgaaaatttcagaatgaaatc-tctgagatttcaggaaatcc-----------------------------

upper sequence: GLYMA20G21250.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G168252_T01 (Zea mays), 5'ss of exon 2
ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgcttt-gtaatgagtc--aattgttctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag
||| | ||||||||||| || |||||| |||||||  |||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||    |||  |  ||| |||   |||   || ||    | | |||||| || | |||     |   ||  | || || |   |     |  ||  |   |||  |                                
ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTGTAATTGTCAAACTCAAGTGGGGTATGGAGTACAAAGgta-atttatcttatttttgtatccagtttgaactggaacatt-ttatttgccagatactgcccctgctct-tattcaaactgaaaaaattttattgtacatttccag-------------------------------

upper sequence: GLYMA20G21250.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G058252_T01 (Zea mays), 5'ss of exon 2
ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgctttgtaatgagtcaattgttctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag
||  ||||||||||||| || |||||  |||||||  |||| || ||||| || ||||| |||||||||||||| |||||||||||||||| |          |||||   |  | ||       | | || ||| ||   |||     |   ||  | |  ||  |  |  |  |  |   |                                         
ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgttcagtttaaaccagaacatt-ttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag------------------------------------

upper sequence: GLYMA20G21250.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G058252_T03 (Zea mays), 5'ss of exon 1
------------ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgctttgtaatgagtcaattgttctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag
            ||  ||||||||||||| || |||||  |||||||  |||| || ||||| || ||||| |||||||||||||| |||||||||||||||| |          |||||   |  | ||       | | || ||| ||   |||     |   ||  | |  ||  |  |  |  |  |   |                                         
CGTTTTGTGCAGACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgttcagtttaaaccagaacatt-ttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag------------------------------------

upper sequence: GLYMA20G21250.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgctttg--taatgagtcaattgt--tctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag
||  | ||| | ||||| ||||| |||||||| || |||||||||||||| || ||||| |||||||||||||||||||||||||| ||||  | | |   |||||      ||  |||||||   ||||   || |||   | ||| || ||   ||  || |||     ||||                                                     
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgta-aattctcccgctttcgtctgtggttcaattgaaatctatgattttttttttctta-acattttcttgggttttt-----ttag-----------------------------------------------------

upper sequence: GLYMA20G21250.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S219_41V6.1 (Physcomitrella patens), 5'ss of exon 2
ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgctttgtaatgagtcaattgttctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag
||  | || || || || ||||| ||  ||||| | |||||||||||||| || |||||||||||||||||||| ||||||||||| |||    || || |  ||  |  ||  ||   |||||||    | | |   |  ||||  |   | ||  |||     ||  ||||         || ||| |  ||||    |  |                    
ACAGTGCCTGTGAATCCGAAGCCCTTTCTGAACGACTTGACTGGGAAGCCGGTCATTGTGAAACTCAAGTGGGGCATGGAGTACAAAGgtg---ctctgct--ttgttcctgtctctcctgttcta--actgtctgggttgtacagctgt-tgtcgctgtgatgccgcaagct--------gttctttctattcatacccttcc--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295086|gb|FG986805.1|FG986805
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|58022880|gb|CX709621.1|CX709621
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|10234556|gb|BE803444.1|BE803444
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|207759847|gb|GD732288.1|GD732288
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGCTGGCCAA
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGCTGGCCAA
EST: gi|12689942|gb|BG156278.1|BG156278
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|58020838|gb|CX707580.1|CX707580
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|14990237|gb|BI315910.1|BI315910
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|7588010|gb|AW703815.1|AW703815
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|151400274|gb|EV270088.1|EV270088
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATAGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|17964468|gb|BM271203.1|BM271203
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|5677258|gb|AI938388.1|AI938388
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|31464033|gb|CD406061.1|CD406061
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192308445|gb|FK002817.1|FK002817
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|31312516|gb|CD397719.1|CD397719
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|21600407|gb|BQ610738.1|BQ610738
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|254325850|gb|GR838731.1|GR838731
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192327100|gb|FK015492.1|FK015492
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|207830383|gb|GD802397.1|GD802397
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|18692955|gb|BM521803.1|BM521803
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|254324568|gb|GR833993.1|GR833993
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|31469700|gb|CD411728.1|CD411728
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|208150579|gb|GD945108.1|GD945108
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAA
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192310362|gb|FK002242.1|FK002242
EST:     GACTGGGAAGTCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCCACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192323685|gb|FK015991.1|FK015991
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|31473931|gb|CD415959.1|CD415959
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|151399653|gb|EV269524.1|EV269524
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|18848468|gb|BM567685.1|BM567685
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
EST: gi|192324854|gb|FK016070.1|FK016070
EST:     GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG
genomic: GACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG