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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGATGAGTTGCAGAAGTTTTTATCTGACAAAGATGCGTATCAACAATTTTTGCATTCGCTTGATCAGGTCAACATTCAAACTAATgtaagtttcatatctttactatctcagaatgtaactagtatgttatgtttacttgctgagtttgttgaatttttttgttcctatatactgtactgagatg...

Basic information

species Glycine max
transcript GLYMA20G19470.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G19470.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G53120.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTGATGAGTTGCAGAAGTTTTTATCTGACAAAGATGCGTATCAACAATTTTTGCATTCGCTTGATCAGGTCAACATTCAAACTAATgtaagtttc--atatcttta-ctatctcagaatgtaactagtatgttatgtttacttgctgagtttgttgaatttttttgttcctatatactgtactgagatg--
 || |||||  |   |||| || | |||||||||||||||||||| |||||| |||  || ||||| ||||||||  | || | |||||||||| ||  | |   | |  | | || | ||      ||  | |||   ||| |||   |||     ||||     |  || |   |  |||  ||| ||   
CGTGGATGAACTCAGGAAGCTTCTCTCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAGTCCAGAATAATgtaagtctctaaaacagtcagttgtttctggata-gctaagagtattactattaattgt--agtcctaagaatggagct--tcgttagttatgtgttgatattat

upper sequence: GLYMA20G19470.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G36680.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTGATGAGTTGCAGAAGTTTTTATCTGACAAAGATGCGTATCAACAATTTTTGCATTCGCTTGATCAGGTCAACATTCAAACTAATgtaagt-------------ttcatatc-tttactatctcag--aatgtaactagtatgttatgtttacttgctgagtttgttgaatttttt--tgttcctatatactgtactgagatg
||| |||||| |   |||| || | |||||||| |||||||||||||| ||| |||| |||||||| |||||||  |||||||  |||||||||             |  | ||| | || | ||| |   |||||| ||  |   |||| |    ||  |||| |  || | |||| |  | || || ||||   |  | ||   
TGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAATgtaagtgggaaacatgatgtaaaaatcatctattgtcttaagaaatgtagcttcttcattatttacgttt-ttgagatgattcagttttgtgctttttctttatatgttcattag---