Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCACTACATGGAGTCCTCTTGCCTCTGGAGTGCTCACTGGGAAATATAAGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttccactttaggaaatctttattttaatcctcattttatgtaatgctatttagtatttactcaagtctttttgagacaagtaatgattttgtga...

Basic information

species Glycine max
transcript GLYMA20G19000.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053973|gb|BM732640.1|BM732640
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|192316315|gb|FK011674.1|FK011674
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|51341740|gb|CO983057.1|CO983057
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|16344418|gb|BI970013.1|BI970013
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|7924550|gb|AW830576.1|AW830576
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTANGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|23731385|gb|BU763810.1|BU763810
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|9819631|gb|BE555144.1|BE555144
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|10844260|gb|BF067570.1|BF067570
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAAGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|6727056|gb|AW311410.1|AW311410
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|26048175|gb|CA784741.1|CA784741
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
EST: gi|209726692|gb|BW654821.1|BW654821
EST:     AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAA                         AATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA
genomic: AGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttcc ... ttttctgtagAATCTGGCGTCAAGGTCGCTTGTTGATGATGTGCTTAGGAAGGTTGATGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTCACTACATGGAGTCCTCTTGCCTCTGGAGTGCTCACTGGGAAATATAAGAAAGGAGTTATACCACCGGATAGCAGATTCGCTTTGGAAAATTACAAAgtacttttccactttaggaaatctttattttaatcctcattttatgtaatgctatttagtatttactcaagtctttttgagacaagtaatgattttgtga

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT