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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgcgtatattttcttttttttagtctgttgttgcatcactttaatttgatgaaaatgcttttgtttttggacatcaagctatggattaggccatctcttttacctttagcagctatggtctaattaaaggcaataataatgattaaatgtttggtggggtttgttcag

Basic information

species Glycine max
transcript GLYMA20G16100.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16100.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G860590_T02 (Zea mays), 5'ss of exon 2
TCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgt-atgtgtgcg-tatattttcttttttttagtctgttgt-tgcatcactttaatttgatgaaaatgcttttgtttttggacatcaagctatggattaggccatctcttttacctttagcagctatggtctaattaaaggcaataataatgattaaatgtttggtggggtttgttcag---------
    | |||| | ||||| ||||| || ||  | || |  || ||  ||||| | || || |||||||||||||| ||||| ||||| || ||||||||||| | ||      ||||  | || |  | || ||| |||| |  ||||   | ||       |   | |      | || | || |  | ||   ||  ||    |  | |  |  |      | ||||   | ||||   || || |        |  |||      || | |             
----CGTCCA-GGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGAGGTGAGgtccaaactatacctactctactctactcttttgtgtttatcatcatcatcattattactcgatcagtcgtatgcatatgattccatcatttcagcatctttatctttcaatcatgcttgtggtt--actaaatataaaaaaagaagggggaaatttctcatcgtctatgggacgaacgcag

upper sequence: GLYMA20G16100.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G860590_T01 (Zea mays), 5'ss of exon 2
TCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgt-atgtgtgcg-tatattttcttttttttagtctgttgt-tgcatcactttaatttgatgaaaatgcttttgtttttggacatcaagctatggattaggccatctcttttacctttagcagctatggtctaattaaaggcaataataatgattaaatgtttggtggggtttgttcag---------
 |||||  |  | ||||| ||||| || ||  | || |  || ||  ||||| | || || |||||||||||||| ||||| ||||| || ||||||||||| | ||      ||||  | || |  | || ||| |||| |  ||||   | ||       |   | |      | || | || |  | ||   ||  ||    |  | |  |  |      | ||||   | ||||   || || |        |  |||      || | |             
GCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGAGgtgaggtccaaactatacctactctactctactcttttgtgtttatcatcatcatcattattactcgatcagtcgtatgcatatgattccatcatttcagcatctttatctttcaatcatgcttgtggtt--actaaatataaaaaaagaagggggaaatttctcatcgtctatgggacgaacgcag