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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgcgtatattttcttttttttagtctgttgttgcatcactttaatttgatgaaaatgcttttgtttttggacatcaagctatggattaggccatctcttttacctttagcagctatggtctaattaaaggcaataataatgattaaatgtttggtggggtttgttcag

Basic information

species Glycine max
transcript GLYMA20G16100.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16100.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G860590_T02 (Zea mays), 5'ss of exon 2
TCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgt-atgtgtgcg-tatattttcttttttttagtctgttgt-tgcatcactttaatttgatgaaaatgcttttgtttttggacatcaagctatggattaggccatctcttttacctttagcagctatggtctaattaaaggcaataataatgattaaatgtttggtggggtttgttcag---------
    | |||| | ||||| ||||| || ||  | || |  || ||  ||||| | || || |||||||||||||| ||||| ||||| || ||||||||||| | ||      ||||  | || |  | || ||| |||| |  ||||   | ||       |   | |      | || | || |  | ||   ||  ||    |  | |  |  |      | ||||   | ||||   || || |        |  |||      || | |             
----CGTCCA-GGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGAGGTGAGgtccaaactatacctactctactctactcttttgtgtttatcatcatcatcattattactcgatcagtcgtatgcatatgattccatcatttcagcatctttatctttcaatcatgcttgtggtt--actaaatataaaaaaagaagggggaaatttctcatcgtctatgggacgaacgcag

upper sequence: GLYMA20G16100.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G860590_T01 (Zea mays), 5'ss of exon 2
TCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgt-atgtgtgcg-tatattttcttttttttagtctgttgt-tgcatcactttaatttgatgaaaatgcttttgtttttggacatcaagctatggattaggccatctcttttacctttagcagctatggtctaattaaaggcaataataatgattaaatgtttggtggggtttgttcag---------
 |||||  |  | ||||| ||||| || ||  | || |  || ||  ||||| | || || |||||||||||||| ||||| ||||| || ||||||||||| | ||      ||||  | || |  | || ||| |||| |  ||||   | ||       |   | |      | || | || |  | ||   ||  ||    |  | |  |  |      | ||||   | ||||   || || |        |  |||      || | |             
GCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGAGgtgaggtccaaactatacctactctactctactcttttgtgtttatcatcatcatcattattactcgatcagtcgtatgcatatgattccatcatttcagcatctttatctttcaatcatgcttgtggtt--actaaatataaaaaaagaagggggaaatttctcatcgtctatgggacgaacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309118|gb|FG999065.1|FG999065
EST:     CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
EST: gi|14205657|gb|BG839335.1|BG839335
EST:     CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
EST: gi|192313456|gb|FK005522.1|FK005522
EST:     CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
EST: gi|58019242|gb|CX705984.1|CX705984
EST:     CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
EST: gi|58018944|gb|CX705686.1|CX705686
EST:     CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
EST: gi|11274562|gb|BF324905.1|BF324905
EST:     CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
EST: gi|21602164|gb|BQ612495.1|BQ612495
EST:     CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
EST: gi|192313455|gb|FK005521.1|FK005521
EST:     CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
EST: gi|23735151|gb|BU765842.1|BU765842
EST:     ATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: ATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
EST: gi|254346210|gb|GR859823.1|GR859823
EST:     CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAG                         GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG
genomic: CCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGgtatgtgtgc ... gtttgttcagGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAG