Sequence
atgc intronic sequence ATGC exonic sequenceGGTGACGCCATGGGGATGAACATGGTTTCCAAAGGGGTCCAGAATGTTCTTGATTTCCTTCAAAGTGATTTCCCTGATATGGATGTTATTGGCATCTCTGgtaaatttttatgtcctttatcactttagtggggctccaatagttcattaatcaacttgcattaatgccaaagatatatgtctgtcagatgctgataaat...
Basic information
species | Glycine max |
transcript | GLYMA20G05530.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G05530.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0122g00610.t01 (Vitis vinifera), 5'ss of exon 2
GGTGACGCCATGGGGATGAACATGGTTTCCAAAGGGGTCCAGAATGTTCTTGATTTCCTTCAAAGTGATTTCCCTGATATGGATGTTATTGGCATCTCTGgtaaatttttatgtcctttatcactttagtggggctccaatagttcattaatcaacttgcattaatg-ccaaagatat-atgtctgtcagatgc-tgataaat
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GGTGATGCAATGGGCATGAACATGGTTTCGAAAGGGGTTCAAAATGTCCTGGATTTCCTTCAAAATGACTTCCCAGACATGGATGTTATTGGCATCTCTGgtgagcccat-tgtattttagcactcatcttaattaatagtagttgtctcttcag-ttacgtgcatggtcattcgcatcatcttttttaataacatgtcaaa-
upper sequence: GLYMA20G05530.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S139_2V6.1 (Physcomitrella patens), 5'ss of exon 2
GGTGACGCCATGGGGATGAACATGGTTTCCAAAGGGGTCCAGAATGTTCTTGATTTCCTTCAAAGTGATTTCCCTGATATGGATGTTATTGGCATCTCTGgtaaatttttatgtcct--ttatca--ctttagtggggctccaatagttcattaatc-aacttgcattaatgccaaagatatatgtctgtcagatgctgataaat--
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GGTGACGCAATGGGGATGAACATGATATCCAAAGGCGTACAGAATGTTTTGGATTACCTTCAGGATATAAACCCGGACATGGAGGTCATCAGCGTGTCTGgtttgcaac-atgacccagttgttggtccttcgtttcagttcattttttcgcttgtctagcgcttgtttagctgtacagtatactcacgtagtctgtacatgtgcag
upper sequence: GLYMA20G05530.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ10313 (Selaginella moellendorffii), 5'ss of exon 2
GGTGACGCCATGGGGATGAACATGGTTTCCAAAGGGGTCCAGAATGTTCTTGATTTCCTTCAAAGTGATTTCCCTGATATGGATGTTATTGGCATCTCTGgtaaatttttatg----tcctttatcactttagtggggctccaatagttcattaatcaacttgcattaatgccaaagatatatgtctgtcagatgctgataaat
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GGTGACGCAATGGGGATGAACATGATCTCCAAGGGGGTCCAAAACGTTTTGGACTATCTTCACGATGTATTCCCCGACATGTGTGTTATCAGCGTCTCTGgtaaatttccttgaagatgtcttgtcccttggtctgagttgcaa-acttgtcttcccag---------------------------------------------
upper sequence: GLYMA20G05530.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ19556 (Selaginella moellendorffii), 5'ss of exon 2
GGTGACGCCATGGGGATGAACATGGTTTCCAAAGGGGTCCAGAATGTTCTTGATTTCCTTCAAAGTGATTTCCCTGATATGGATGTTATTGGCATCTCTGgtaaatttttatg----tcctttatcactttagtggggctccaatagttcattaatcaacttgcattaatgccaaagatatatgtctgtcagatgctgataaat
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GGTGACGCAATGGGGATGAACATGATCTCCAAGGGGGTCCAAAACGTTTTGGACTATCTTCACGATGTATTCCCCGACATGTGTGTTATCAGCGTCTCTGgtaaatttccttgaagatttcttgtc-ctttggtctgagttgcaaacttgtcttcccag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192327549|gb|FK021268.1|FK021268EST: GTTATTGGCATCTCTG GAAATTACTGTTCAGACAAGAAACCTGCTGCAGTAAATTGGATTGAGGGAC
genomic: GTTATTGGCATCTCTGgtaaattttt ... aattcttcagGAAATTACTGTTCAGACAAGAAACCTGCTGCAGTAAATTGGATTGAGGGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGACGCCATGGGGATGAACATGGTTTCCAAAGGGGTCCAGAATGTTCTTGATTTCCTTCAAAGTGATTTCCCTGATATGGATGTTATTGGCATCTCTGgtaaatttttatgtcctttatcactttagtggggctccaatagttcattaatcaacttgcattaatgccaaagatatatgtctgtcagatgctgataaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggggc