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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAACTGGCTCGGATACATTTGAGAGTGCCGGAGTACGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGGgtttgtatcgttcaaaccttttgttattttactttttgaaattatttgtttagtaactgcttaataatgtgacgctttgttaagggattgtgcactctttttaattttgcag

Basic information

species Glycine max
transcript GLYMA20G01360.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G01360.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCAACTGGCTCGGATACATTTGAGAGTGCCGGAGTACGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGGgtttgtatcgttcaaaccttttgttattttactttttgaaattatttgtttagtaactgcttaataatgtgacgctttgttaagggattgtgcactctttttaattttgcag
 ||||| |||   | ||||| |||||||| || || || || ||||| ||||||||||||||||| |||||||||||  |||| || || |||  || | |||     || |||||| |||    |||    || | | | |  |      |   |  | |    ||||||                                
ATTCAATTGGTAAGAATACAATTGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGGTTAACGGAGgtgggt-ttgtttg--tctcttgttagtttttgattttgttttgtgtatcttttgttgattggctcgtcttcttctttgtag------------------------------

upper sequence: GLYMA20G01360.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCAACTGGCTCGGATACATTTGAGAGTGCCGGAGTACGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGGgtttgtatcgttcaaaccttttgttattttactttttgaaattatttgtttagtaactgcttaataatgtgacgctttgttaagggattgtgcactctttttaattttgcag
 ||||||| |   | ||||| |||||||| || || || |||||||| ||||| |||||||||||||||||||||||  | || ||||| |||| || | | |      |||    ||||    | || |  ||  ||| ||  |   |  |   | || |      | ||                                
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttgctgcggattttg---atttcgtgtgttcatgttgattgattgattgat-ttggctcatcttgtatctggtag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523518|gb|BU082329.1|BU082329
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGG                         TTCGGTGTGTAGTTTTCATCTTCTATCGGAACGTGCAGAGGTTGAAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGGgtttgtatcg ... aattttgcagTTCGGTGTGTAGTTTTCATCTTCTATCGGAACGTGCAGAGGTTGAAGCCAG
EST: gi|213601102|gb|DB956452.1|DB956452
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGG                         TTCGGTGTGTAGTTTTCATCTTCTATCGGAACGTGCAGAGGTTGAAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGGgtttgtatcg ... aattttgcagTTCGGTGTGTAGTTTTCATCTTCTATCGGAACGTGCAGAGGTTGAAGCCAG
EST: gi|9820925|gb|BE556435.1|BE556435
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGG                         TTCGGTGTGTAGTTTTCATCTTCTATCGGAACGTGCAGAGGTTGAAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGGgtttgtatcg ... aattttgcagTTCGGTGTGTAGTTTTCATCTTCTATCGGAACGTGCAGAGGTTGAAGCCAG