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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCCAAACTGCGAAAATCTGCTCTCGAAAGATTGGAGAAAGCTAGTGAAGAGTCACTGCTTAGCCAGGCAAGCATAAAAGGATACTTTCCCTTGGGGGgttggggtgggttaatttgcaatttagatgttagattttaatggagttgagcatctagctctacacatattatgcagatttattctcatgtctttgctat...

Basic information

species Glycine max
transcript GLYMA20G01190.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G01190.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G15860.2 (Arabidopsis thaliana), 5'ss of exon 2
---------------------------GGTTCCAAACTGCGAAAATCTGCTCTCGAAAGATTGGAGAAAGCTAGTGAAGAGTCACTGCTTAGCCAGGCAAGCATAAAAGGATACTTTCCCTTGGGGGgttggggtgggttaatttgcaatttagatgttagattttaatggagttgagcatctagctctacacatattatgcagatttattctcatgtctttgctat
                             | | ||  |    || || ||||| || |||||||||   || |||||||||||||| ||||||||||||||  |          |||   || |    ||  |      | |||    ||    ||| | |||  |  ||||  || |    |  || | |  | ||                              
GATACAGAGCAGGATAGTGATGATGAGAATGCGAAGTTAAAGAAGTCAGCTCTTGAGAGATTGGAGGGTGCAAGTGAAGAGTCACTTCTTAGCCAGGCAAgttt---------ttttttttttgcttcttatgtacaagtcattgttcatgctcatggt-gataatgttggaaatgcgttaatgcctttgcctacatag----------------------------

upper sequence: GLYMA20G01190.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G15860.1 (Arabidopsis thaliana), 5'ss of exon 2
-------------------------------GGTTCCAAACTGCGAAAATCTGCTCTCGAAAGATTGGAGAAAGCTAGTGAAGAGTCACTGCTTAGCCAGGCAAGCATAAAAGGATACTTTCCCTTGGGGGgttggggtgggttaatttgcaatttagatgttagattttaatggagttgagcatctagctctacacatattatgcagatttattctcatgtctttgctat
                                 | | ||  |    || || ||||| || |||||||||   || |||||||||||||| ||||||||||||||  |          |||   || |    ||  |      | |||    ||    ||| | |||  |  ||||  || |    |  || | |  | ||     |||  | |                 
AGCTGATACAGAGCAGGATAGTGATGATGAGAATGCGAAGTTAAAGAAGTCAGCTCTTGAGAGATTGGAGGGTGCAAGTGAAGAGTCACTTCTTAGCCAGgcaagttt---------ttttttttttgcttcttatgtacaagtcattgttcatgctcatggt-gataatgttggaaatgcgttaatgcctttgcctacat-----agacctttg----------------