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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAATGAATGACAGAGGAGTTTCATTTACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcctgcctttggtgcttaatgtgtgaccagatctttgggattgagtttgtatacctatttctatgacaaaatgactgtgaaatgtattttttt...

Basic information

species Glycine max
transcript GLYMA19G43800.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43800.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0036g00370.t01 (Vitis vinifera), 5'ss of exon 2
GGGAATGAATGACAGAGGAGTTTCATTTACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgt--taaactc--ctgcctttggt-gcttaatgtgtgaccagatctttggga-ttgagtttgtat-acctatttctatgacaaaatgactgtgaaatgtattttttt
||||||||||||||| |||||||| | |||||| ||  |||| || ||  ||||||||||| |||| |||||||| || ||| |||||||||||||||||||   |||||    || |  | || | ||| |   |  | | ||  |  | | |||||||  ||| | ||| |    |      | || |||  |   ||       
GGGAATGAATGACAGGGGAGTTTCTTATACATTCGGCCCTGACAAAGTGACAGAGTTTCTTGAGAAGCATGATCTGGACCTTGTTTGTCGTGCTCATCAGgtatcaaacttgattgtcagtagttgtttatttcatacctatattataagcagttgagttcatatcatctactctactacttgtaggattgtagagaata-------

upper sequence: GLYMA19G43800.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ32796 (Selaginella moellendorffii), 5'ss of exon 2
GGGAATGAATGACAGAGGAGTTTCATTTACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcctgcctttggtgcttaatgtgtgaccagatctttgggattgagtttgtatacctatttctatgacaaaatgactgtgaaatgtattttttt
|||   ||||||  |||| || |||||||||||||||    |   |||  | ||||||||||| ||||| || || ||||| |||||||| |||||||||||   |  |  |   |  || |||  | | |        ||||| |    |   ||| | |  ||  | || |||                         
GGGTCAGAATGATCGAGGTGTCTCATTTACATTTGGTAGCAACGCGGTTGCGGAGTTTCTTCAAAAACAGGACCTCGATCTCATTTGTCGAGCTCATCAGgtatgatgctcg---tgagttctttctttattgttg---ctttgagcccca---tgtctgca-ataacaataacag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6133946|gb|AW132339.1|AW132339
EST:     CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAG                         GTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
genomic: CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcc ... cttttaccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
EST: gi|8669886|gb|BE190993.1|BE190993
EST:     CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAG                         GTTGTGGAAGATGGATATGAGTACTTTGCTAATCGACAACTTGTAACAATA
genomic: CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcc ... cttttaccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
EST: gi|208067226|gb|GD862234.1|GD862234
EST:     CTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAG                         GTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
genomic: CTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcc ... cttttaccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
EST: gi|298189387|gb|HO037790.1|HO037790
EST:     CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAG                         GTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
genomic: CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcc ... cttttaccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
EST: gi|192299585|gb|FG993255.1|FG993255
EST:     CAGAGTTTTTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAG                         GTTGTGGAAGATGGATATGAGTTCTTTGTTAATCGACAACTTGTAACAATA
genomic: CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcc ... cttttaccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
EST: gi|298189504|gb|HO037907.1|HO037907
EST:     CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAG                         GTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
genomic: CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcc ... cttttaccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
EST: gi|151403035|gb|EV272848.1|EV272848
EST:     CAGAGTTTCTTCGGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAG                         GTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
genomic: CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcc ... cttttaccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
EST: gi|6482298|gb|AW201567.1|AW201567
EST:     CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAG                         GTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
genomic: CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcc ... cttttaccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
EST: gi|298167241|gb|HO010680.1|HO010680
EST:     CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAG                         GTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA
genomic: CAGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGgttaaactcc ... cttttaccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATA