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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag

Basic information

species Glycine max
transcript GLYMA19G43410.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 2
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtc---attcattttgaacaaacatgtgttatta-tgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
| ||||| || || |||||||||||||| || || |||||||||||||||||||| || ||||||||| | ||||||||  | ||||||||||| ||||||||    |   | ||        |  | || ||| ||| |  |   |  || ||   |   |||  | |  |   ||||   || | | | ||     | ||  |  |  |  
GTATGGGGTTCATTCAGTCCAACCACTCTGTGATCATGTACAACAACACCATGATCAGTTTCAACATGCTCGAGGCTGCACGTATCAATGGTGTGAAGAGgtccggctctctcttttttttttacatatttttactgttatatctca--gcttagcctgagcttgttttatc---catatcaattcatttgttacaactaatggtcctacag-

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 2
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtct----ttatgtcgctgacatagt--gatccttgttttttg---gtttatttttttttaag---------------------
| ||||| || |||||||| || ||||| || || |||||||||||||||||||| || || |||||| | ||||||||  | ||||||||||| ||||||| ||  ||    || | |  ||     | || |   ||     ||   ||||   ||     | || | |||||     |  ||     |||||         ||||  |   |||                      
GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgt-atatatac-aaatatat-tgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcag

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G28840.1 (Arabidopsis thaliana), 5'ss of exon 2
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
| |||||||||||||||   || ||||| || |||||||| || || || |||||||| ||||| |||||||||||||| |||||||||||  ||||||||| | | |  ||       | |  ||| |        || |  || | ||| | |           | | | |   |     || || |||| ||||            
GTATGGGTTTTATCCAGAGTAATCACTCTGTGATTATGTATAATAATACTATGATTAGTTTCAATATGATTGAGGCTGCTAGGATCAATGGGATTAAGAGgttagttagattttgttttcttcggttttcgca--gtttacggtttcttaaaacaa----------gttaaaaagattggattttttgtttgctttag-----------

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: EDP09235 (Chlamydomonas reinhardtii), 5'ss of exon 3
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaac--aaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
    ||  |        |   | |||    |||   ||  |  | |||   ||    || |   | | ||  || |   |    ||  |  |  |        |  |  |  || |     |  | |||      |      |  || | |  | ||     |  |  | | ||   ||  |||  || | ||||       |      | 
----GGTGTGCGAGGGCTGTGAGCACGTGTTCAACCTGGCCGCCGACA---TGGGCGGCATGGGCTTCATCCAGTCCAACCAC-TCCGTCATCATGTACAACAACACGgtgcgagccggggccggggttgcgggctttgggccggttacctggt-tacgggctgggcgggttaccaggttgtccc-gtctgttggaaagcagtgcggcga-

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgt---cattcattttgaacaaacatgtgttattat-gtcactttcaattgcataatatagtcttt--atgtcgctgacatagtg--atccttgttttttggtttatttttttttaag
| ||||| || ||||||||||| ||| | ||||||||||||||||| |||||||| |||||||||||| |||| ||  |  | |||||||||||    ||||      || | |    |   |   | |||   | | || || ||  |   || | | |  ||   | ||| |||     |||  |||  ||||| |                   
GCATGGGCTTCATCCAGTCCAATCACGCTGTCATTATGTACAACAATACCATGATCAGCTTCAACATGCTTGAAGCCTCACGCATCAATGGTGTCTCTAGgtgcatgctcctctctgcccttccaattttaccttagccatttccagctctttattcttgctttcgaaggtctctgcttatgtgcaatctctgtttctct-----------------

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
| |||||||| || |||||||||||| | || || |||||||||||||||||||| ||||| |||||| | ||||| ||  | |||||||| ||     |||     |   |   |       | || ||   || ||  |  | |||        ||||  | ||   || | |   |  |    ||     |  || ||| |||   
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccc----cttctttttgcctctctccctctcgcagctctggatcttcttttc---gaaaaaaaaacacacagttaacaatgaatgtttctttg--

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtc-gctgacatagtgatccttgttttttggtttatttttttttaag--
| ||||| || |||||||| |||||| | |||||||||||||||||||||||||| || ||||||||| | || || ||  | ||||| |||||||   |||      | | | |      ||  || || || || |  || ||     || |   |||  | || ||    |  | ||   |||||| ||   |||||  |  ||  |  
GTATGGGCTTCATCCAGTCTAACCACGCCGTCATTATGTACAACAACACCATGATCAGTTTCAACATGCTCGAAGCCGCTCGCATCAACGGTGTTACCCGgtgcgcgctctcgca-----gtgctttctt-tgccattaccagtt---cgattttcacttcgtctctgccattagtgggaattttgtttctt---ttattcctaattgcgtt

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ37016 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
|||||||||| |||||||| || ||||| |||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||  |  ||| |         | | || ||  |  | |||  |  ||  | | |    |||   | || |                                       
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgt-gtggattct---------tcttttgttccgagaatttgga--gctcacttttccttttggcttgcag---------------------------------------

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || |||||||      |  ||     |  |   |  |        |||  |   ||   | | |  |   |  |                                           
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgtgatgtttctaagttgttcttcccaaggatttggagctcactctctcgcttggcttccag-----------------------------------------

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtc---attcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
|||||||||| |||||||| || ||||| |||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||    |||| | ||       |  |  ||   |  ||| ||||  ||      |  ||                                                     
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgtgtggattcttcttttggttccgagaatttggagctcattttcc-ttttggcttgcag-----------------------------------------------------

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
|||||||||| |||||||| || |||||||||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||  |  ||| |           | || || ||  | |||  |  ||  | | |    |||   | || |                                       
GGATGGGTTTCATCCAGTCGAATCACTCAGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgt-gtggattctt--------ctttttgttctgagaatttgga--gctcacttttccttttggcttgcag---------------------------------------

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ10353 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || || ||||      |     |      |  ||| || | || |    | ||| |    |   ||| | | | |||  ||                                    
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgt----gatgtttctaagttgttct-tcccaaggatttggagctcactctctctct-tggcttccag-----------------------------------

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ18599 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || ||||||| || || || ||||      |     |      |  ||| || | || |    | ||| |    |   ||||| | | |||  ||                                    
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAACGGAGTCAAAAGgtagcctgt----gatgtttctaagttgttct-tcccaaggatttggagctcactctctttct-tggcttccag-----------------------------------

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || || ||||      |  ||        |  ||| || | || |    | ||| |    |   ||||| | | |||  ||                                    
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtggtgtttc----taagttgttct-tcccaaggatttggagctcactctctttct-tggcttccag-----------------------------------

upper sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtc---attcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag
|||||||||| |||||||| || ||||| |||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||    |||| | ||       |  |  ||   |  |||||||   ||      |  ||                                                     
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgtgtggattcttctttttgttccgagaatttggagctcacttttccttttggcttgcag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617024|gb|DB959336.1|DB959336
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTATCCGGAATTCAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... tttttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCGGAATTCAAACAGTTGGA
EST: gi|209713688|gb|BW681841.1|BW681841
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTATCCGGAATTCAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... tttttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCGGAATTCAAACAGTTGGA
EST: gi|15287506|gb|BI471397.1|BI471397
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... tttttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCGGAATTCAAACAGTTGGA