Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag

Basic information

species Glycine max
transcript GLYMA19G43400.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 2
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtc---attcattttaaacaaacatgtgttatta-tgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
| ||||| || || |||||||||||||| || || |||||||||||||||||||| || ||||||||| | ||||||||  | ||||||||||| ||||||||    |   | ||        |  | || ||| ||| |  |   |  || ||   |   |||   ||      ||||   || | | | ||     | ||  |  |  ||
GTATGGGGTTCATTCAGTCCAACCACTCTGTGATCATGTACAACAACACCATGATCAGTTTCAACATGCTCGAGGCTGCACGTATCAATGGTGTGAAGAGgtccggctctctcttttttttttacatatttttactgttatatctca--gcttagcctgagctt---gttttatccatatcaattcatttgttacaactaatggtcctacag

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 2
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaa-acaaacatgtgttattatgtcactttcaattgcataatat----agtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag-------------------------
| ||||| || |||||||| || ||||| || || |||||||||||||||||||| || || |||||| | ||||||||  | ||||||||||| ||||||| ||  ||   || | |        | ||| | |  ||  |   || ||||  |    |||  |   |  | ||  ||  |||     |||||         | ||  |                            
GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgt-atatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatt-tgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcag

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G28840.1 (Arabidopsis thaliana), 5'ss of exon 2
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
| |||||||||||||||   || ||||| || |||||||| || || || |||||||| ||||| |||||||||||||| |||||||||||  ||||||||| | | |  ||       | |  ||| |        || |  || | ||| | |              || | |  |||  | | ||||| ||||  |||       
GTATGGGTTTTATCCAGAGTAATCACTCTGTGATTATGTATAATAATACTATGATTAGTTTCAATATGATTGAGGCTGCTAGGATCAATGGGATTAAGAGgttagttagattttgttttcttcggttttcgca--gtttacggtttcttaaaacaa-------------gttaaaaagat--tggattttttgtttgctttag-----

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: EDP09235 (Chlamydomonas reinhardtii), 5'ss of exon 3
--------------------------------------------------GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
                                                  | ||||| || ||||||||||||||||| ||||| ||||||||||||||  ||   |||     |  |   | || |||  |  |       ||||   ||| |  |    |   |       |   |   |||| |  ||  ||| | |  |  |     |                                              
GGTGTGCGAGGGCTGTGAGCACGTGTTCAACCTGGCCGCCGACATGGGCGGCATGGGCTTCATCCAGTCCAACCACTCCGTCATCATGTACAACAACACGgtg-cgagc-----cggggccggggttgcgggctttgggccggttacctggtta--cgggctgggcgggt---taccaggttgtc-ccgtctgttggaaagcagtgcggcga----------------------------------------------

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgt---cattcattttaaacaaacatgtgttattat-gtcactttcaattgcataatatagtcttt--atgtcgctg-tcata-gtgatccttgttttttggtttattttttttaag
| ||||| || ||||||||||| ||| | ||||||||||||||||| |||||||| |||||||||||| |||| ||  |  | |||||||||||    ||||      || | |    |   |   | |||   | | || || ||  |   || | | |  ||   | ||| ||| | ||  |  |||  ||||| |                  
GCATGGGCTTCATCCAGTCCAATCACGCTGTCATTATGTACAACAATACCATGATCAGCTTCAACATGCTTGAAGCCTCACGCATCAATGGTGTCTCTAGgtgcatgctcctctctgcccttccaattttaccttagccatttccagctctttattcttgctttcgaaggtctctgcttatgtgcaatctctgtttctct----------------

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
| |||||||| || |||||||||||| | || || |||||||||||||||||||| ||||| |||||| | ||||| ||  | |||||||| ||     |||     |   |   |       | || ||   || ||  |  | |||        ||||  | |||     | |   |  |    ||     |  || ||| ||   
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccc----cttctttttgcctctctccctctcgcagctctggatcttcttttcgaa---aaaaaaacacacagttaacaatgaatgtttctttg-

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtc-gctgtcatagtgatccttgttttttggtttattttttttaag
| ||||| || |||||||| |||||| | |||||||||||||||||||||||||| || ||||||||| | || || ||  | ||||| |||||||   |||      | |   |      ||  || || || || |  || ||     || |   |||  | || ||  | |  | ||   |||||| ||   ||  |  ||     
GTATGGGCTTCATCCAGTCTAACCACGCCGTCATTATGTACAACAACACCATGATCAGTTTCAACATGCTCGAAGCCGCTCGCATCAACGGTGTTACCCGgtgcgcgctctcgca-----gtgctttctt-tgccattaccagtt---cgattttcacttcgtctctgccattagtgggaattttgtttcttttattcctaattgcgtt

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ37016 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
|||||||||| |||||||| || ||||| |||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||  |  ||| |         | | || ||  |  | |||  |  ||  | | |    |||   | || |                                      
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgt-gtggattct---------tcttttgttccgagaatttgga--gctcacttttccttttggcttgcag--------------------------------------

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || |||||||      |     |      |  ||| || | || |    | ||| |    |   |||     | |||  ||                                   
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgt----gatgtttctaagttgttct-tcccaaggatttggagctcactctctc-gcttggcttccag----------------------------------

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtc---attcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
|||||||||| |||||||| || ||||| |||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||    |||| | ||       |  |  ||   |  ||| ||||  ||      |  ||                                                    
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgtgtggattcttcttttggttccgagaatttggagctcattttcc-ttttggcttgcag----------------------------------------------------

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
|||||||||| |||||||| || |||||||||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||  |  ||| |           | || || ||  | |||  |  ||  | | |    |||   | || |                                      
GGATGGGTTTCATCCAGTCGAATCACTCAGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgt-gtggattctt--------ctttttgttctgagaatttgga--gctcacttttccttttggcttgcag--------------------------------------

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ10353 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || || ||||      |     |      |  ||| || | || |    | ||| |    |   ||| | | | |||  ||                                   
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgt----gatgtttctaagttgttct-tcccaaggatttggagctcactctctctct-tggcttccag----------------------------------

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ18599 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || ||||||| || || || ||||      |     |      |  ||| || | || |    | ||| |    |   ||||| | | |||  ||                                   
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAACGGAGTCAAAAGgtagcctgt----gatgtttctaagttgttct-tcccaaggatttggagctcactctctttct-tggcttccag----------------------------------

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || || ||||      |            |  ||| || | || |    | ||| |    |   ||||| | | |||  ||                                   
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgt----ggtgtttctaagttgttct-tcccaaggatttggagctcactctctttct-tggcttccag----------------------------------

upper sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtc---attcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag
|||||||||| |||||||| || ||||| |||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||    |||| | ||       |  |  ||   |  |||||||   ||      |  ||                                                    
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgtgtggattcttctttttgttccgagaatttggagctcacttttccttttggcttgcag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7232221|gb|AW567578.1|AW567578
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... tttttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
EST: gi|213615128|gb|DB962840.1|DB962840
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... tttttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
EST: gi|298163054|gb|HO011787.1|HO011787
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... tttttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
EST: gi|151396815|gb|EV266688.1|EV266688
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         ANNNNNNNATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... tttttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
EST: gi|192324156|gb|FK017887.1|FK017887
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... tttttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGA
EST: gi|192308375|gb|FK000899.1|FK000899
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAG
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... tttttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAG