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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTTGTTGTTGAGTCGCGGTAAAAGCTCGCATCTTCTAGTTTTCAGCGAAGATCTTTTCTTTATATACCTTCTGCCACCTATCATATTTAATGCCGGgtaaagttttcagcaccaactagctgtctaatgaatcattgtctaattaattggcaccccaatgaaaattattttgtgttttcctgatctctagttgttcttgtacttagagcaaggtatacatgattattccag

Basic information

species Glycine max
transcript GLYMA19G42900.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 2
TCATTTTGTTGTTGAGTCGCGGTAAAAGCTCGCATCTTCTAGTTTTCAGCGAAGATCTTTTCTTTATATACCTTCTGCCACCTATCATATTTAATGCCGGgtaaagttttcagcaccaactagctgtctaatgaatcattgtctaattaat-tggcaccccaatgaaaattattttgtgttttcctgatctct--agttgttcttgtacttagagcaaggtatacatgattattccag
| |||||| ||   ||| | || | |||||| |||||||| || ||||| |||||||||||||||||||| ||||| || || || ||||||||||| ||||||   |  ||   |||  ||      |   |||  ||  | || |||||   |  |  || ||||  || | | ||  || |  |  ||||  | |  ||                                    
TTATTTTGCTGACAAGTGGGGGAAGAAGCTCACATCTTCTGGTCTTCAGTGAAGATCTTTTCTTTATATATCTTCTTCCGCCCATTATATTTAATGCTGGgtaagtctagcattcccatttaatctcttg--gaagaatgatttatttaatgctggtcttcagtgaagtttttatagttcttactagtactcttgaatgatt------------------------------------

upper sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S169_48V6.1 (Physcomitrella patens), 5'ss of exon 2
TCATTTTGTTGTTGAGTCGCGGTAAAAGCTCGCATCTTCTAGTTTTCAGCGAAGATCTTTTCTTTATATACCTTCTGCCACCTATCATATTTAATGCCGGgtaaagttttcagcaccaactagctgtctaatgaatcattgtctaattaattggcaccccaatgaaaattattttgtgttttcctgatctctagttgttcttgtacttagagcaaggtatacatgattattccag
|  | ||| | |  ||    ||| || | || ||| |||| |  ||    ||||| |||||||| ||||||||||| |||||||| || || ||||| |||||    | | | |   | | |  || |     |   ||||   ||  || ||       |  | |   ||  ||  | ||  ||    | | || | ||||||  |     |                      
TAGTGTTGATTTCAAGCAAAGGTCAAGGTTCTCATATTCTGGAGTTTGATGAAGAGCTTTTCTTCATATACCTTCTTCCACCTATAATCTTCAATGCTGGgta----tgttaacgttatccacttgac-----atctattgctgaagaaactgaagt---agagcaggatagcttcagattctcta--ttattgtcgatcttgtgttggtgacc---------------------