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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAACGACGATTTGTACAAGGAAGCCGCTTCCGAGGCTTTTCTCTTTTACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACgtaactctctctctctctctctcactcaacgacttattttcctagggtttcctcgttaatttttttctctccaatttcttacgggacttagcacgtgcttgcag

Basic information

species Glycine max
transcript GLYMA19G42150.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170466|gb|HO019090.1|HO019090
EST:     ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACgtaactctct ... gtgcttgcagGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|19934424|gb|BQ079454.1|BQ079454
EST:     ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACgtaactctct ... gtgcttgcagGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|9205376|gb|BE331600.1|BE331600
EST:     ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACgtaactctct ... gtgcttgcagGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|6502294|gb|AW203667.1|AW203667
EST:     ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACgtaactctct ... gtgcttgcagGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|27424501|gb|CA936021.1|CA936021
EST:     ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACgtaactctct ... gtgcttgcagGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|10232617|gb|BE801505.1|BE801505
EST:     GTCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: GTCCAACCGAAGCGGAGACgtaactctct ... gtgcttgcagGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|192295752|gb|FG992593.1|FG992593
EST:     ACAACAAATCGCACTTGAATTCCCTTCCAATGTCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACgtaactctct ... gtgcttgcagGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|151412172|gb|EV281984.1|EV281984
EST:     ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACgtaactctct ... gtgcttgcagGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|208299695|gb|GE097178.1|GE097178
EST:     ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACgtaactctct ... gtgcttgcagGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT