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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGCTGGATTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGgtattatttttcttcttggtttacgcctatatttacttaagtttattaatatcgttttattagactttaaggaactgtctgaaagaaaatttgaatacta...

Basic information

species Glycine max
transcript GLYMA19G41810.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41810.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0060g01580.t01 (Vitis vinifera), 5'ss of exon 2
ACAAGCTGGATTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGgtat-tatttttcttcttggtttacgcctatatttacttaagtttattaatat-cgttttatta--gactttaaggaactgtctgaaagaaaatttgaatacta
||| ||||  ||||| |||||||| || ||||| ||||||||||| || |||||||  |||||||| ||| || | || ||  ||||||| ||||||||||||  ||| |||  ||| | | |   | |    | | || |  ||  ||| ||  |||  |||   |||| ||  ||         |||||||      |    
ACAGGCTGCTTTGGCAAAGAAAGGGGAGGATTATTTTCTGATCAAAACCGATTGCCAGAGGGTTCCTGGGAATCCGTCGACTTCGTTTTCAGTCTTTGCGgtaaatatattttctctagttgttttcatgagctcatttcaactt-ctaacatatgttcgattgctgactatactgagggaaagagaagaaaacgcatctg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193562110|gb|FK516919.1|FK516919
EST:     TTGCCTCAGGGTTCCCGGGGGATGCATCAACGGCGTTTTCTGTCTTTGCG                         GTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
genomic: TTGCCTCAGGGTTCCC-GGGGATGCATCAACGGCGTTTTCTGTCTTTGCGgtattatttt ... tgattggcagGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
EST: gi|6727063|gb|AW311417.1|AW311417
EST:     ATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCG                         GTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
genomic: ATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGgtattatttt ... tgattggcagGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
EST: gi|10847169|gb|BF069903.1|BF069903
EST:     ATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCG                         GTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC
genomic: ATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGgtattatttt ... tgattggcagGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAAC