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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAACACCTTCCAGCCATGGTTACTGGTGTTTTCACCGATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGTTGCTTTCGATTGgttagatattttgtctatggcgtttttcgttattttttaatttatggttctgaatgtgaaacgatgtttgatgaattccgtttatctcctaccag

Basic information

species Glycine max
transcript GLYMA19G41770.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 2
TTGGAACACCTTCCAGCCATGGTTACTGGTGTTTTCACCGATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGTTGCTTTCGATTGgt-tagatattttgtctatggcgtttttcgttattttttaatttatggttctgaa-----tgtgaaacgatgtttgatgaattccgtttatctcctaccag-----------
 | |||  ||| ||||| ||||| | ||| ||||   | |||||||||||| | ||| |||||||||| || |||||||| |||||||| || || ||| |  |  |  ||||| |   ||| ||  |  ||| ||| ||| |   ||  |      | | | ||   |||||   |  |  ||| |  |   |               
CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaacttgctgtctttccagttcttt-tcgtttcttagtttgtttatcaaaggtgcctattatacacggtttgtaaacattggttgaatttgcaatgtttcttttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254325496|gb|GR838377.1|GR838377
EST:     TAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGTTGCTTTCGATTG                         AACGTAGCCCACCTATCGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGCT
genomic: TAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGTTGCTTTCGATTGgttagatatt ... ctcctaccagAACGTAGCCCACCTATCGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGCT