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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAATCTGAGTGGGAGAATTTTAGTTGGTTTGAGGTGGTGGAATGAAATCAATGATCTGGGTGAGAGTGTTTGGAAATTTGAGTCTCTTGATCAGCAGgtgcaaattgcttgttttgctcagttgcaacttgcatgttgttatcttactttttgaataatctctctctatcctgttatgtctctgctgagttgcataagattgcaatccaaatgctatgaaggtacttccatcttacatatggtgtttgtttttcgtccag

Basic information

species Glycine max
transcript GLYMA19G41530.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41530.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G09330.1 (Arabidopsis thaliana), 5'ss of exon 3
CAAGAATCTGAGTGGGAGAATTTTAGTTGGTTTGAGGTGGTGGAATGAAATCAATGATCTGGGTGAGAGTGTTTGGAAATTTGAGTCTCTTGATCAGCAGgtgcaaattgcttgttttgctcagttgcaacttgcatgttgttatctt-actttttgaataatctctctctatcctgttatgtctctgctgagttgcataagattgcaatccaaatgctatgaaggtacttccatcttacatatggtgtttgtttttcgtccag
 |||||| | |||||| | ||  | |||||| | ||||||||||| || ||||||||  |||| || ||||| |||||||| ||||||||||||||| ||||     || |||   ||  |||   | |  | |  |     | ||   |  | | |  |  | | || || | | ||| | | | ||   | |    |    ||   |||    | ||||  ||                                       
TAAGAATGTCAGTGGGCGTATACTGGTTGGTCTCAGGTGGTGGAACGAGATCAATGACTTGGGAGAAAGTGTCTGGAAATTCGAGTCTCTTGATCAGGAGgttagcttttcttcacttattcacaaggatatgggttcagcctgtcgagaaatgtggggttgtgtttccct-ttccgttttttttttgtatactcatgt---gttttcatcatttttctatacag---------------------------------------