Sequence
atgc intronic sequence ATGC exonic sequenceTAAGATGGATAAATTATCTCAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAACTCCATCATTGAACTTCATGCAGTCCTTGGCAACAGgtactactactatattgttttcaaagttgttgctagtttaattcggcttttcaccatcaattactgcaagaattttcgctattacagtgtcactcagaggctgtccgtaaaacatgttcttttgtttcatggttttgtatatgtgattttatgtgtttttgatgattgtatcag
Basic information
species | Glycine max |
transcript | GLYMA19G41250.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G41250.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0060g00240.t01 (Vitis vinifera), 5'ss of exon 2
TAAGATGGATAAATTATCTCAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAACTCCATCATTGAACTTCATGCAGTCCTTGGCAACAGgtactactactatattgttttcaaagttgttgctagtttaattcggcttttcaccatcaatta--ctgcaagaattttcgctattacagtgtcac-tcagaggctgtccgtaaaacatgttcttttgtttcatggttttgtatatgtgattttatgtgtttttgatgattgtatcag
|||||||||| || || | ||||||||||||||||| |||||||||||||| |||||||||| | || |||||||| |||||||| || ||||||||||||| | || ||| ||| | | | || || | ||| | | || ||| || | | | || ||| | ||||
TAAGATGGATTAACTACTTGAGGCCTGATTTGAAGAGGGGAGCATTCTCACAACAGGAAGAGAGCCTGATAATTGAACTCCATGCAGTTCTAGGCAACAGgtactttaa--atcctgtcagcaac-ctcctacaag---aacccacttttaatatagtagttttcctgttggattctgaagttttctgctgtttcatcag-----------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6341619|gb|AW164443.1|AW164443EST: CAGCAGGAAGAGAACTCCATCATTGAACTTCATGCAGTCCTTGGCAACAG GTGGTCACAGATTGCAGCTCAGTTACCAGGAAGAACTGATAATGAGATAAA
genomic: CAGCAGGAAGAGAACTCCATCATTGAACTTCATGCAGTCCTTGGCAACAGgtactactac ... attgtatcagGTGGTCACAGATTGCAGCTCAGTTACCAGGAAGAACTGATAATGAGATAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAGATGGATAAATTATCTCAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAACTCCATCATTGAACTTCATGCAGTCCTTGGCAACAGgtactactactatattgttttcaaagttgttgctagtttaattcggcttttcaccatcaattactgcaagaattttcgctattacagtgtcactcagaggctgtccgtaaaacatgttcttttgtttcatggttttgtatatgtgattttatgtgtttttgatgattgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA