Sequence
atgc intronic sequence ATGC exonic sequenceTCTGCTTGGATGGAACATTGCCTGGTTATCATTGGCATCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGgtattgctttacttgatctctttaattaattgttctgtttcattttatttttctgtaatagatttgtgtagcaaataatatatgccttgcaaaaggttga...
Basic information
species | Glycine max |
transcript | GLYMA19G41240.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G41240.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G05910.2 (Arabidopsis thaliana), 5'ss of exon 2
TCTGCTTGGATGGAACATTGCCTGGTTATCATTGGCATCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGgtat--tgctttacttgatctcttt-aattaattgttctgtttcattttatttttctgtaatagatttgtgtagcaaataatatatgccttgcaaaaggttga
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TTTGTTTGGATGGAACATTGCCTGGATATCACTTGCACCGTGGACATGGATCTGGAGCTAATAGCTGGCTCATTCAATTGGAGgtttagtgaattatttgttgtcgatgaaacactagttaaagtcttcattgttgatgtttgatg--tttttgtatcag--------------------------
upper sequence: GLYMA19G41240.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G26670.1 (Arabidopsis thaliana), 5'ss of exon 2
TCTGCTTGGATGGAACATTGCCTGGTTATCATTGGCATCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGgtattgctttacttgatctctttaattaattgttctgtttcattttatttttctgtaatagatttgtgtagcaaataatatatgccttgcaaaaggttga
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TTTGTTTGGATGGTACATTGCCTGGATATCACTTACATCGTGGACATGGATCTGGAGCCAATAGCTGGTTAATTCAATTAGAGgt--tagcgaaagaagtttctgtttttagtaatgtt-tgttactaaaatttttttgaatgg---tgtgttg-aaattggaaatg---tggaaag------
upper sequence: GLYMA19G41240.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0060g00230.t01 (Vitis vinifera), 5'ss of exon 2
TCTGCTTGGATGGAACATTGCCTGGTTATCATTGGCATCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGgtattgctttacttgatctctttaattaattgttctgtttcattttatttttctgtaatagatttgtgtagcaaataatatatgccttgcaaaaggttga----------
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TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTCAGGGGCAAACAGTTGGCTCATTCAATTGGAGgtctg--tgaagcaga---gttagaacaatggaactttataatt----ttcaatatataaatgctgctttacactttatgt-tttcttgcaaaagttcaaaattttatatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151407914|gb|EV277729.1|EV277729EST: GGCATCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAG GGTGGTGGATGGTGTAATAATATTAGAACATGTGTTTATCGCAAGAAAACC
genomic: GGCATCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGgtattgcttt ... tctgttgcagGGTGGTGGATGGTGTAATAATATTAGAACATGTGTTTATCGCAAGAAAACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGCTTGGATGGAACATTGCCTGGTTATCATTGGCATCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGgtattgctttacttgatctctttaattaattgttctgtttcattttatttttctgtaatagatttgtgtagcaaataatatatgccttgcaaaaggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA