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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgtaactcattttttcattctctattttctttgatttctaacttattattattattactatgatatgatgatggtgatggtgatgatgtaacag

Basic information

species Glycine max
transcript GLYMA19G39780.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39780.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 2
CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgtaactcattttttcattct-ctattttctttgatttctaacttattattattattactatgatatgatgatggtgatggtgatgatgtaacag------
||||||||||| || ||||||||||| ||||| |||||||||||||    | ||| |  | |  |||| || ||      | |  |   | | | | ||  ||||  |||  |  |   |  |     | |  |||      
CTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATGgtaagggttgtttcctctgtgttattgtcgttataactttagctgcaactgtgaataacatgagttgaacactgattttttccctttttttcagaaacca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286667|gb|BI470558.1|BI470558
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgtaactcatt ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|9259879|gb|BE348026.1|BE348026
EST:     CCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CCAAGGCCACCCTATGgtaactcatt ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC