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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAGTGATCAAAAACTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATCGGACGGGATTATATAAAATATTTTGCTTACAGACTACCTGAGgtcagatatttattatctttgaccattttaccttcacacctttattttgatatgcttatatgatcaatgctttagattgtgaagttatgaaattttatag...

Basic information

species Glycine max
transcript GLYMA19G37610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37610.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 2
TCCAAGTGATCAAAAACTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATCGGACGGGATTATATAAAATATTTTGCTTACAGACTACCTGAGgtcagatatttattatctttgaccattttaccttcacacctttattttgatatgcttatatgatcaatgctttagattgtgaagttatgaaattttatag-----------
||| ||||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||| ||| | |||||||| ||||||||||||  |||||| |||||||| |||  |||||  ||  ||     | ||   | ||         ||||| ||    |||||| |||  |  | ||| |    |  ||  ||||| |             
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttat--tccatgtgtggtctataattac---------ttgatgtgtccctatgataaataatgcatattttatgctgttgttattttgtcataccgactagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16519553|gb|BI347338.1|BI347338
EST:     AGAATATCGGACGGGATTATATAAAATATTTTGCTTACAGACTACCTGAG                         GTATTCTGCAAGACTTACAAACAGGTTGATCCTTGTGTTCATTCAAGTATG
genomic: AGAATATCGGACGGGATTATATAAAATATTTTGCTTACAGACTACCTGAGgtcagatatt ... tacattttagGTATTCTGCAAGGCTTACAAACAGGTTGATCCTTGTGTTCATTCAAGTATG