Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgcaattatgtcaaaacttgtcctttaaaggtttgaaatgatgcattttgataggaatcagtcaagattggacagtgatacagaagcttttgtga...

Basic information

species Glycine max
transcript GLYMA19G37600.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37600.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 2
TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgcaattatgtcaaaacttgt--cctttaaaggttt---gaaatgatgcattttga---taggaatcagtcaagattggacagtgatacagaagcttttgtga
  | |||| |||   |||   ||| || || |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||  |  ||||| |             |||||||   ||  | || |||    |  ||||| ||   | |   |  |    | |  |||||   | ||  |  |   | |       
ATCCACAGCCAGAGCTGAGCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGCCTTCAGCAGTCGGGACGGgtaagcaatgaccaaagtaaacttgcagccactgaaagttattagtgatgatacaccctaaccttcagctctactagagatttcgctgt--tctaagtgttc------

upper sequence: GLYMA19G37600.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 3
TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAA---GGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgcaattatgtcaaaacttgtcctttaaaggtttgaaatgatgcattttgataggaatcagtcaagattggacagtgatacagaagcttttgtga--
    |||   |||  |||||  ||||||||||| ||||| || ||||| ||||| ||||| |||||||||||     |||| |||||||||||||| || |||||  |||  || || |  ||   |||    | |   |  | |||  |      |||   |  | ||  |  |    | |   | | |   |     | |   
---AACATCTAGGTCTGATTCTCAGTCACAACGGCCACCACACAGTATTCATGTAAATCCAAAGTATTTAGAGGCACGGCAACGTCTTCAGCAGTCGAGCAGGgtgagtg--atgatttacaatggtgtagaatcatattgagcaatattagtggctgagcagtgttagctatcaaaaaagaaaaaaaaaagggtggcagagctg