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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTCCTTGCTCGCCTCTGGTAGCAGGGATAATGATGTCATTTTGTGGGATGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGCGGCCACCGCGATCAGgtttggttctctgctgttaaaacttccagttgaagttgaacttctgatattggttatatatttggttaatgtaggttagctccttttggatagtaggtag...

Basic information

species Glycine max
transcript GLYMA19G37050.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37050.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g04690.t01 (Vitis vinifera), 5'ss of exon 2
TGGCTCCTTGCTCGCCTCTGGTAGCAGGGATAATGATGTCATTTTGTGGGATGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGCGGCCACCGCGATCAGgttt--------ggttctctgctg-----ttaaaacttcca---------gttgaagttga-acttctgatattggttata-tatttggttaatgtaggttagctccttttggatagtaggtag---
||| || || || || |||||||||| |||||||||||| || || |||||||| ||||||||||| || || ||||||||||| ||||| || || |||||||        | ||  |   |       | ||| ||  |          ||||  |||   |||||  | ||| ||||| ||| |   |   ||  |||       ||||  |   | || |   
TGGATCTTTACTTGCTTCTGGTAGCAAGGATAATGATGTTATCTTATGGGATGTTGTTGGCGAGACAGGCCTTTTTCGCCTTCGTGGCCATCGTGACCAGgtttttatttgagatttcccaatcaagatcttaaattttgatatatatatattgagcttgctgcttcttgttttgtttataatatctaaatgtggtgagttcctattgtttgttttacatgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927373|gb|BU544512.1|BU544512
EST:     ATGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGCGGCCACCGCGATCAG                         GCTGCTAAGCAACTCACAGTGTCAAATGTCAGTACCATGAAAATGAATGAT
genomic: ATGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGCGGCCACCGCGATCAGgtttggttct ... tctgtttcagGCTGCTAAGCAACTCACAGTGTCAAATGTCAGTACCATGAAAATGAATGAT
EST: gi|6341858|gb|AW164682.1|AW164682
EST:     ATGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGCGGCCACCGCGATCAG                         GCTGCTAAGCAACTCACAGTGTCAAATGTCAGTACCATGAAAATGAATGAT
genomic: ATGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGCGGCCACCGCGATCAGgtttggttct ... tctgtttcagGCTGCTAAGCAACTCACAGTGTCAAATGTCAGTACCATGAAAATGAATGAT