Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCTTCTCATGGTTGGCACAGGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcag

Basic information

species Glycine max
transcript GLYMA19G33650.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G33650.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G329144_T02 (Zea mays), 5'ss of exon 2
ATCTCTTCTCATGGTTGGCACAGGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcag
                       |||   || ||||  || |||| |||    |||||||| |||||||| || ||||| ||||||||||| || ||||||||        | |  | |||  || ||                    | |  || ||||   ||||  | |  | |  |  ||     | |  || |  || |  || |  || | ||||    | |   
-----------------------GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgta--------cgctatctttccctgaca-------------------gttggaagaatttgttcttggtat--tctcgtggttcgggagatgctgagacagtt--ttgatgttctcgatgccgtcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23726942|gb|BU761482.1|BU761482
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA