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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcag

Basic information

species Glycine max
transcript GLYMA19G33650.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G33650.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G329144_T02 (Zea mays), 5'ss of exon 2
GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcag
|||   || ||||  || |||| |||    |||||||| |||||||| || ||||| ||||||||||| || ||||||||        | |  | |||  || ||                    | |  || ||||   ||||  | |  | |  |  ||     | |  || |  || |  || |  || | ||||    | |   
GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgta--------cgctatctttccctgaca-------------------gttggaagaatttgttcttggtat--tctcgtggttcgggagatgctgagacagtt--ttgatgttctcgatgccgtcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171406|gb|HO016438.1|HO016438
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCCTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|9819421|gb|BE554934.1|BE554934
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|193396325|gb|FK363199.1|FK363199
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTACCAATTACACCCAGTTAA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATT-CCAATTACACCCAGTTAA
EST: gi|13477752|gb|BG507504.1|BG507504
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298166996|gb|HO010435.1|HO010435
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|15663056|gb|BI700427.1|BI700427
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|9820763|gb|BE556273.1|BE556273
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|208042686|gb|GD841798.1|GD841798
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|208167184|gb|GD963030.1|GD963030
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|19453002|gb|BM954412.1|BM954412
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298187303|gb|HO034452.1|HO034452
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298197094|gb|HO041837.1|HO041837
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298173934|gb|HO017270.1|HO017270
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298168059|gb|HO013322.1|HO013322
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298194861|gb|HO043333.1|HO043333
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298192806|gb|HO033240.1|HO033240
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298184031|gb|HO029244.1|HO029244
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|151397536|gb|EV267409.1|EV267409
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|192319134|gb|FK009102.1|FK009102
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298166854|gb|HO010293.1|HO010293
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298166545|gb|HO009984.1|HO009984
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298195273|gb|HO043801.1|HO043801
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298183535|gb|HO028748.1|HO028748
EST:     AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATG                         TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttac ... taaactgcagTGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA