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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGAGAGCAACCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGgttaactattaattttatctttcttccatctcctttttgttttttcaagcaagttactcattttaaaacaaaagggtgacaaacgatgctaacatttgcgctttaaaacgttgtgcacag

Basic information

species Glycine max
transcript GLYMA19G32710.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G32710.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g06160.t01 (Vitis vinifera), 5'ss of exon 5
CGAGAGAGCAACCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGgt--taactattaattttatctttcttccatctcctttttgttttttcaagcaagttactcattttaaaacaaaagggtg-acaaacgatgctaacatttgcgctttaaaacgttgtgcacag---------
|| ||  | ||||||||||||||||| || ||||| || || |||||||| ||||| ||||| ||||||||      || |  | |        |||||   |  |||  ||   || | | | || |   || |  |||||      |  |      | ||  | ||  | || |      || |   |           
CGCGAAGGAAACCGCAAAGGTCCAACATCGAGTTCAGAGCAGGAAGGACCCAAAACGCCAGACCCTAAGgtggcggttacttgtctagctccgtttccacagcaatttctttacatccatctatttgcatcttcttcaacaatgttaagtgcttttctttctttctttctctctctctttttttttttcccctctaagtag