Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct...
Basic information
species | Glycine max |
transcript | GLYMA19G32480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 2
-TCTT-GGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct
|||| || || ||||| || || || |||||||||||||||||||| || |||||||||| || || ||||| || || ||||| ||||| ||||| | | |||| | || ||| ||||| || || |||| ||| | || | | || | || | | ||
ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATCACAAGTTGGCCTTACGTCTTCATCCAGACAAGAATCCTGGAGATGAGgtag--gatcttgtttccaaat----------tttttccatgga------ttaagtgccatttgtctcaattgagctgttatgtgatgtcag-----------
upper sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G135461_T01 (Zea mays), 5'ss of exon 2
--TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgt----cattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct
||| || || | || || | ||||| || ||||||||||||||||| |||| ||||| |||| || ||||| |||||||| ||||| ||||| | || || | | | |||| | | | ||| | | | | | | || | || ||||| | || | | | | | | ||
ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacatgaatgtttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctag--gcattggtgggagaagc-----
upper sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G075485_T02 (Zea mays), 5'ss of exon 2
--TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct
||| || || |||| || || ||||| || ||||||||||||||||| |||| ||||| |||| || ||||| |||||||| ||||| ||||| | || || | || | | | ||||| ||| || | ||| | | | | | | | || |
ATTCTAGGAGTTGAGAAGACCGCTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc----aaccataaacatgaatgtttttct-----acaggcatttagtgcaaagtatctcaaatataatgttatatgttgctag-----------
upper sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G359599_T01 (Zea mays), 5'ss of exon 3
--TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagtttttt---ttttttttttaataggagggatcgaatccgcaacct
||| || || | || || | ||||| || ||||||||||||||||| |||| ||||| |||| || ||||| |||||||| ||||| ||||| | || || | || | | | |||||| || | | || || |||| | | || |||| ||| || | ||
ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc----aaccataaacatgaatgttttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctaggcattggtgggagaag--
upper sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G414114_T01 (Zea mays), 5'ss of exon 5
--TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattc--ttctagccgaatatgccatc-attttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct
||| || || | || || | ||||| || ||||||||||||||||| |||| ||||| |||| || ||||| |||||||| ||||| ||||| | || || || | | ||| | | ||||| | | | | | || | || ||||| | || | | | | | | |||
ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacaagaatgttttttaccttttagactcaagcaatatttttatggatcttcctttttcatctag--gcattggtgggagaagca----
upper sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 2
--TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct--
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GTTCTTGGTGTGGAAAAGACGGCATCTCAGCAGGAAATTAAGAAAGCTTACTATAAGTTGGCATTGCGGCTCCATCCTGATAAAAATCCTGGTGATGA---Ggtgcatttgatttctaatgatgccaaaatcctat---tctccatatatccgttgcaagggtggttttctggttgttaccctttgtttttttccctcatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208042947|gb|GD842745.1|GD842745EST: ACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAG GAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCG
genomic: ACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttc ... gttgttgcagGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC