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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtttactacgataattctggcagttaagtgtacgcttagttttgtataatagtcctacattatgttaaagatataaggcgttagcgt...

Basic information

species Glycine max
transcript GLYMA19G31770.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 4
GTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtttactacgataattctggcagttaagtgtacgcttagttttgtataat-agtcctacattatgttaaagatataaggcgttagcgt-
|| |   ||||||||||| || |||||||||||||| |||||||| || ||||||  |||| |||| |||||||| |||||||| ||  | ||||||||||| | |||   |  ||| |    ||  || ||    || | |   |  | |  ||  |||  |  ||   |   | | || |||  | ||   |  |  |  
GTATCAAGAGGTTGTTGCGGTGACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGGGTATCACTGGAACTGAGgtatctatgaatgtttttcggtaat--ttatgttgttttattcctctatgaccttaatatgttcggtttgagcgtgtcttgaagtgagaactgggaaatgcc

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 4
GTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtttactacgataattctggcagttaagtgtacgcttagttttgtataatagtcctacatt-atgttaaagatataaggcgttagcgt---------------------------------------------------------------------------
||||| |||||| ||| |||| || |||||||| || ||||||||||||||| |   ||| ||||| ||||| ||||| |||||||| |||||||| |||||   | | || | |  | | | | | || ||   ||    |  |    |||   | || || ||||  | ||| | |   || || | ||   | |   |                                                                           
GTTTGATGAGGTGGTTTCTGTGACAGGTGATGGTACAAATGATGCTCCTGCATTACACGAAGCAGATATTGGGCTTGCTATGGGCATTGCAGGAACAGAGgtac-tgtttcctatgcagttcaaaacttatgaacgtagcatcaa----tagacat-taaaaaagtcagatatttaggacgaatatgtcagtattcactcttactgaattaagttgatcctgataatccatttttcatcttctgaaatggagtaattttgtcttgtatttgtgcag

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 5'ss of exon 4
GTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtttactacgataattctggcagttaagtgtacgcttagttttgtataatagtcctacatt-atgttaaagatataaggcgttagcgt------------------------------------------------------------------------------------------------
||||| |||||| ||| |||| || |||||||| || ||||||||||||||| |   ||| ||||| || || ||||| |||||||| |||||||| |||||   | | || | |  | | | | | || |||  ||    |  |    |||   | || || ||||  | ||| | |  ||| || | ||   | |   |                                                                                                
GTTTGATGAGGTGGTTTCTGTGACAGGTGATGGTACAAATGATGCTCCTGCATTACACGAAGCAGATATCGGGCTTGCTATGGGCATTGCAGGAACAGAGgtac-tgtttcctatgcagttcaaaacttatggatgtagcatcaa----tagacat-taaaaaagtcagatatttaggacaaatatgtcagtattcattcttactgaaataagttgaccctgataacccattttggatactttgtattttctttttcatcttctgaaatggagtaattttgtcttttatttgtgcag

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 5
GTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgt-----ttgtatctcttgtttactacgataatt-ctggcagttaagtgtacgcttagttttgtataatagtcctaca----ttatgttaaagatataaggcgttagcgt---------------------------------------------------------------
|||  | ||||| |||||||| || || ||||| || ||||| ||||| ||| ||   || ||||| ||||| ||||||||||||||||||||||| |||||      | || |||    || ||||  |  || |||  | |  |     | |||        || | |  |  | |     |   ||  |  |  |||||  |   |                                                                
GTTCAGGGAGGTGGTTGCTGTGACAGGCGATGGTACCAATGACGCTCCAGCATTGCATGAAGCAGATATTGGGCTTGCAATGGGCATAGCAGGAACAGAGgtactaactatacctcgcaatttctactgttcttactgtgaatgtaaaaacctcttgcaaggccatcagaagctaagaactcctcacttgcaattgcaaggccatcatgcccttcggcaattctgtgcgtcccttgaaaagataaataacagtataagcttacatacttgcag

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtttactacgataattctggcagttaagtgtacgcttagttttgtataatagtcctacattatgttaaagatataaggcgttagcgt
  |||| ||||| ||||| || || || ||||| || || ||||| |||||  ||   ||||||||||||||||| |||||||| ||||| ||||| |||||  |      || ||  ||   ||   | |||    |||    |     || ||   ||  | ||       ||  ||   |||||   |         
AATTGGAGAGGTAGTTGCAGTGACAGGGGATGGGACAAACGATGCCCCTGCGTTGCATGAGGCAGACATTGGACTAGCAATGGGAATAGCTGGAACAGAGgtaagctatagttattctctgttattggtttggttaataaaaaaatctcgagattaacattttcgtttggtgcta-attcccgatatgcag---------

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatctcttgtttactacgataattctggcagttaagtgtacgcttagttttgtataatagtcctacattatgttaaagatataaggcgttagcgt
  | || ||||| ||||| || ||||| |||||||| ||||||||||||||| ||   ||||| |||||||||||||| ||||| ||||| ||||| |||||     |   || |   ||   |      |   |  | | ||||   |   | || | ||    |  || |   |       ||| ||  |        
AATGGGAGAGGTAGTTGCAGTGACTGGGGATGGAACAAATGATGCTCCTGCATTGCATGAGGCTGACATTGGACTTGCCATGGGAATAGCTGGAACAGAGgtagcctttggttctcctctgttactgagttattaaatcattgtaaaatcgatgttctcta----tgttaaaaactcccgcgtatacaacacacag----

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 4
GTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttg--tatc------tcttgtttactacgataattctggcagttaagtgtacgcttagttttgtataatagtcctaca-ttatgttaaagatataaggcgttagcgt
|| ||||||||||||||| || || |||||||| || |||||||| || ||  ||   ||||| |||||||| ||||| ||||||||||| ||||| ||||||||  ||||      |||| | ||||| |  |  | |      |     ||    | || ||   |  | ||   ||| |||| ||  || | |  |          
GTATGGTGAGGTTGTTGCAGTGACAGGTGATGGGACAAATGATGCACCAGCTTTGCATGAGGCTGACATTGGGCTTGCCATGGGCATAGCTGGAACAGAGgtttgcttatccgaccatcttatgtacta-gtcatctgtttttactgcccttatctgttgtctttcttcttggttgcacagttattttttagttttttgat--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298178942|gb|HO024677.1|HO024677
EST:     CACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAG                         GTTGCCAAAGAAAATGCCGATGTCATTATAATGGATGATAACTTCACGACT
genomic: CACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGgtttgtatct ... ccatttacagGTTGCCAAAGAAAATGCCGATGTCATTATAATGGATGATAACTTCACGACT